Hb_000599_140

Information

Type -
Description -
Location Contig599: 104665-106357
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24730g
description POPTRDRAFT_205887; hypothetical protein
nr
ID XP_011004043.1
description PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Populus euphratica]
swissprot
ID O82268
description Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 SV=1
trembl
ID A9PEU5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s24730g PE=2 SV=1
Gene Ontology
ID GO:0009855
description protein light-dependent short hypocotyls 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50458: 104263-105259
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_140 0.0 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Populus euphratica]
2 Hb_000116_230 0.1188009299 - - -
3 Hb_026698_010 0.1446575406 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
4 Hb_010407_070 0.1465873608 - - hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
5 Hb_002798_060 0.1502852816 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
6 Hb_008959_030 0.1505846893 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
7 Hb_005306_130 0.1590596758 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
8 Hb_000237_080 0.1609895137 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
9 Hb_012753_130 0.1618547132 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001655_070 0.1659729812 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
11 Hb_006582_020 0.167696019 - - Zinc finger protein ZFPM1 [Theobroma cacao]
12 Hb_000139_240 0.1707440869 - - PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
13 Hb_001220_030 0.1722140083 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
14 Hb_146464_010 0.1743795067 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
15 Hb_001318_030 0.1747241569 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
16 Hb_005928_110 0.1760669556 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
17 Hb_004032_270 0.1769005571 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
18 Hb_000203_180 0.178137541 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
19 Hb_000032_620 0.1783867829 - - hypothetical protein RCOM_1311830 [Ricinus communis]
20 Hb_000665_010 0.1807083648 - - hypothetical protein 20 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000599_140 Hb_000599_140 Hb_000116_230 Hb_000116_230 Hb_000599_140--Hb_000116_230 Hb_026698_010 Hb_026698_010 Hb_000599_140--Hb_026698_010 Hb_010407_070 Hb_010407_070 Hb_000599_140--Hb_010407_070 Hb_002798_060 Hb_002798_060 Hb_000599_140--Hb_002798_060 Hb_008959_030 Hb_008959_030 Hb_000599_140--Hb_008959_030 Hb_005306_130 Hb_005306_130 Hb_000599_140--Hb_005306_130 Hb_000116_230--Hb_010407_070 Hb_000237_080 Hb_000237_080 Hb_000116_230--Hb_000237_080 Hb_001655_070 Hb_001655_070 Hb_000116_230--Hb_001655_070 Hb_000116_230--Hb_002798_060 Hb_000116_230--Hb_008959_030 Hb_026698_010--Hb_010407_070 Hb_004225_180 Hb_004225_180 Hb_026698_010--Hb_004225_180 Hb_017987_070 Hb_017987_070 Hb_026698_010--Hb_017987_070 Hb_000457_170 Hb_000457_170 Hb_026698_010--Hb_000457_170 Hb_004607_150 Hb_004607_150 Hb_026698_010--Hb_004607_150 Hb_010407_070--Hb_004225_180 Hb_000050_100 Hb_000050_100 Hb_010407_070--Hb_000050_100 Hb_007849_040 Hb_007849_040 Hb_010407_070--Hb_007849_040 Hb_002798_060--Hb_004607_150 Hb_009486_190 Hb_009486_190 Hb_002798_060--Hb_009486_190 Hb_002798_060--Hb_008959_030 Hb_004012_010 Hb_004012_010 Hb_002798_060--Hb_004012_010 Hb_023536_010 Hb_023536_010 Hb_002798_060--Hb_023536_010 Hb_004055_010 Hb_004055_010 Hb_008959_030--Hb_004055_010 Hb_008959_030--Hb_001655_070 Hb_000483_350 Hb_000483_350 Hb_008959_030--Hb_000483_350 Hb_004109_200 Hb_004109_200 Hb_008959_030--Hb_004109_200 Hb_005928_110 Hb_005928_110 Hb_008959_030--Hb_005928_110 Hb_004221_010 Hb_004221_010 Hb_008959_030--Hb_004221_010 Hb_005324_010 Hb_005324_010 Hb_005306_130--Hb_005324_010 Hb_004734_060 Hb_004734_060 Hb_005306_130--Hb_004734_060 Hb_033152_080 Hb_033152_080 Hb_005306_130--Hb_033152_080 Hb_000209_020 Hb_000209_020 Hb_005306_130--Hb_000209_020 Hb_000139_240 Hb_000139_240 Hb_005306_130--Hb_000139_240 Hb_000059_210 Hb_000059_210 Hb_005306_130--Hb_000059_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
116.183 166.205 0.85926 45.2688 71.7401 120.219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
104.76 114.545 66.5746 59.9541 0

CAGE analysis