Hb_000050_100

Information

Type -
Description -
Location Contig50: 114830-116496
Sequence    

Annotation

kegg
ID tcc:TCM_034627
description KNOTTED-like from
nr
ID XP_012068139.1
description PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15969 PE=4 SV=1
Gene Ontology
ID GO:0005634
description knat1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45729: 109702-116195 , PASA_asmbl_45730: 115792-116375
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000050_100 0.0 - - PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
2 Hb_017987_090 0.0926332729 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
3 Hb_000050_090 0.0972628318 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
4 Hb_000703_060 0.1347476711 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
5 Hb_010407_070 0.144914747 - - hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
6 Hb_026698_010 0.1623050796 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
7 Hb_000139_240 0.1744023473 - - PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
8 Hb_004225_180 0.1765904445 - - bel1 homeotic protein, putative [Ricinus communis]
9 Hb_003978_010 0.1776014581 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
10 Hb_007849_040 0.178403279 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
11 Hb_114310_040 0.182830125 - - PREDICTED: purple acid phosphatase 2-like [Jatropha curcas]
12 Hb_001817_180 0.1836549892 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
13 Hb_011472_040 0.1845394077 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
14 Hb_002078_420 0.1860775127 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
15 Hb_015401_020 0.1888577839 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_000953_140 0.1890923851 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
17 Hb_011344_170 0.1891597271 - - PREDICTED: UDP-glucuronate 4-epimerase 4-like, partial [Camelina sativa]
18 Hb_002960_060 0.1917327654 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
19 Hb_000029_160 0.1931671429 - - Nitrilase, putative [Ricinus communis]
20 Hb_018133_120 0.1937462874 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000050_100 Hb_000050_100 Hb_017987_090 Hb_017987_090 Hb_000050_100--Hb_017987_090 Hb_000050_090 Hb_000050_090 Hb_000050_100--Hb_000050_090 Hb_000703_060 Hb_000703_060 Hb_000050_100--Hb_000703_060 Hb_010407_070 Hb_010407_070 Hb_000050_100--Hb_010407_070 Hb_026698_010 Hb_026698_010 Hb_000050_100--Hb_026698_010 Hb_000139_240 Hb_000139_240 Hb_000050_100--Hb_000139_240 Hb_000953_140 Hb_000953_140 Hb_017987_090--Hb_000953_140 Hb_007849_040 Hb_007849_040 Hb_017987_090--Hb_007849_040 Hb_017987_090--Hb_000050_090 Hb_015401_020 Hb_015401_020 Hb_017987_090--Hb_015401_020 Hb_001817_180 Hb_001817_180 Hb_017987_090--Hb_001817_180 Hb_000050_090--Hb_000703_060 Hb_005702_030 Hb_005702_030 Hb_000050_090--Hb_005702_030 Hb_000703_240 Hb_000703_240 Hb_000050_090--Hb_000703_240 Hb_011344_170 Hb_011344_170 Hb_000050_090--Hb_011344_170 Hb_000703_060--Hb_000139_240 Hb_000703_060--Hb_017987_090 Hb_005038_020 Hb_005038_020 Hb_000703_060--Hb_005038_020 Hb_011861_070 Hb_011861_070 Hb_000703_060--Hb_011861_070 Hb_000703_060--Hb_011344_170 Hb_010407_070--Hb_026698_010 Hb_004225_180 Hb_004225_180 Hb_010407_070--Hb_004225_180 Hb_000116_230 Hb_000116_230 Hb_010407_070--Hb_000116_230 Hb_000599_140 Hb_000599_140 Hb_010407_070--Hb_000599_140 Hb_010407_070--Hb_007849_040 Hb_026698_010--Hb_004225_180 Hb_026698_010--Hb_000599_140 Hb_017987_070 Hb_017987_070 Hb_026698_010--Hb_017987_070 Hb_000457_170 Hb_000457_170 Hb_026698_010--Hb_000457_170 Hb_004607_150 Hb_004607_150 Hb_026698_010--Hb_004607_150 Hb_000209_020 Hb_000209_020 Hb_000139_240--Hb_000209_020 Hb_005324_010 Hb_005324_010 Hb_000139_240--Hb_005324_010 Hb_005306_130 Hb_005306_130 Hb_000139_240--Hb_005306_130 Hb_002270_010 Hb_002270_010 Hb_000139_240--Hb_002270_010 Hb_000011_080 Hb_000011_080 Hb_000139_240--Hb_000011_080 Hb_004734_060 Hb_004734_060 Hb_000139_240--Hb_004734_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.6443 101.388 0.015277 0.350732 89.182 95.2608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.6156 38.096 47.2574 60.3893 0

CAGE analysis