Hb_000703_060

Information

Type -
Description -
Location Contig703: 78260-86707
Sequence    

Annotation

kegg
ID rcu:RCOM_1177170
description Phosphoenolpyruvate carboxylase, putative (EC:1.3.1.74)
nr
ID AFN70424.1
description phosphoenolpyruvate carboxylase [Manihot esculenta]
swissprot
ID Q9FV65
description Phosphoenolpyruvate carboxylase 2 OS=Flaveria trinervia GN=PPCC PE=1 SV=1
trembl
ID U5HTH1
description Phosphoenolpyruvate carboxylase OS=Manihot esculenta GN=PEPC PE=2 SV=1
Gene Ontology
ID GO:0005829
description phosphoenolpyruvate carboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54917: 78363-82380 , PASA_asmbl_54918: 85853-86463
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_060 0.0 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
2 Hb_000050_100 0.1347476711 - - PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
3 Hb_000139_240 0.1483039703 - - PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
4 Hb_017987_090 0.1507941258 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
5 Hb_005038_020 0.1600775455 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_011861_070 0.16015118 - - F-box/LRR-repeat protein, putative [Ricinus communis]
7 Hb_011344_170 0.1648239742 - - PREDICTED: UDP-glucuronate 4-epimerase 4-like, partial [Camelina sativa]
8 Hb_000050_090 0.1661168164 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
9 Hb_001396_260 0.1673905917 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
10 Hb_002078_420 0.169580634 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
11 Hb_001817_180 0.1703323844 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
12 Hb_114310_040 0.1710109469 - - PREDICTED: purple acid phosphatase 2-like [Jatropha curcas]
13 Hb_000011_080 0.1710420556 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
14 Hb_015401_020 0.1725175572 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_012395_160 0.1726583506 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
16 Hb_003299_090 0.1727013384 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
17 Hb_005914_090 0.1748574028 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
18 Hb_005306_130 0.1753386465 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_003299_080 0.1757786624 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
20 Hb_029866_130 0.1788269956 - - hypothetical protein JCGZ_00035 [Jatropha curcas]

Gene co-expression network

sample Hb_000703_060 Hb_000703_060 Hb_000050_100 Hb_000050_100 Hb_000703_060--Hb_000050_100 Hb_000139_240 Hb_000139_240 Hb_000703_060--Hb_000139_240 Hb_017987_090 Hb_017987_090 Hb_000703_060--Hb_017987_090 Hb_005038_020 Hb_005038_020 Hb_000703_060--Hb_005038_020 Hb_011861_070 Hb_011861_070 Hb_000703_060--Hb_011861_070 Hb_011344_170 Hb_011344_170 Hb_000703_060--Hb_011344_170 Hb_000050_100--Hb_017987_090 Hb_000050_090 Hb_000050_090 Hb_000050_100--Hb_000050_090 Hb_010407_070 Hb_010407_070 Hb_000050_100--Hb_010407_070 Hb_026698_010 Hb_026698_010 Hb_000050_100--Hb_026698_010 Hb_000050_100--Hb_000139_240 Hb_000209_020 Hb_000209_020 Hb_000139_240--Hb_000209_020 Hb_005324_010 Hb_005324_010 Hb_000139_240--Hb_005324_010 Hb_005306_130 Hb_005306_130 Hb_000139_240--Hb_005306_130 Hb_002270_010 Hb_002270_010 Hb_000139_240--Hb_002270_010 Hb_000011_080 Hb_000011_080 Hb_000139_240--Hb_000011_080 Hb_004734_060 Hb_004734_060 Hb_000139_240--Hb_004734_060 Hb_000953_140 Hb_000953_140 Hb_017987_090--Hb_000953_140 Hb_007849_040 Hb_007849_040 Hb_017987_090--Hb_007849_040 Hb_017987_090--Hb_000050_090 Hb_015401_020 Hb_015401_020 Hb_017987_090--Hb_015401_020 Hb_001817_180 Hb_001817_180 Hb_017987_090--Hb_001817_180 Hb_005399_020 Hb_005399_020 Hb_005038_020--Hb_005399_020 Hb_012395_160 Hb_012395_160 Hb_005038_020--Hb_012395_160 Hb_002849_080 Hb_002849_080 Hb_005038_020--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_005038_020--Hb_148209_020 Hb_002078_420 Hb_002078_420 Hb_005038_020--Hb_002078_420 Hb_000174_200 Hb_000174_200 Hb_005038_020--Hb_000174_200 Hb_010080_060 Hb_010080_060 Hb_011861_070--Hb_010080_060 Hb_003866_020 Hb_003866_020 Hb_011861_070--Hb_003866_020 Hb_000078_100 Hb_000078_100 Hb_011861_070--Hb_000078_100 Hb_005635_010 Hb_005635_010 Hb_011861_070--Hb_005635_010 Hb_002725_070 Hb_002725_070 Hb_011861_070--Hb_002725_070 Hb_000227_380 Hb_000227_380 Hb_011861_070--Hb_000227_380 Hb_005052_010 Hb_005052_010 Hb_011344_170--Hb_005052_010 Hb_007307_030 Hb_007307_030 Hb_011344_170--Hb_007307_030 Hb_164010_070 Hb_164010_070 Hb_011344_170--Hb_164010_070 Hb_000853_120 Hb_000853_120 Hb_011344_170--Hb_000853_120 Hb_017434_060 Hb_017434_060 Hb_011344_170--Hb_017434_060 Hb_001989_020 Hb_001989_020 Hb_011344_170--Hb_001989_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.2608 45.5212 0.203018 4.50671 46.7617 50.9899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.641 12.5121 23.7677 23.3835 0.222798

CAGE analysis