Hb_011344_170

Information

Type -
Description -
Location Contig11344: 151779-152405
Sequence    

Annotation

kegg
ID smo:SELMODRAFT_82699
description hypothetical protein
nr
ID XP_010413058.1
description PREDICTED: UDP-glucuronate 4-epimerase 4-like, partial [Camelina sativa]
swissprot
ID -
description -
trembl
ID M0ZXH8
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003960 PE=4 SV=1
Gene Ontology
ID GO:0005768
description udp-d-glucuronate 4-epimerase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011344_170 0.0 - - PREDICTED: UDP-glucuronate 4-epimerase 4-like, partial [Camelina sativa]
2 Hb_005052_010 0.1426214063 - - PREDICTED: uncharacterized protein LOC103339315 [Prunus mume]
3 Hb_007307_030 0.1460849394 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
4 Hb_164010_070 0.1526277819 - - Paramyosin, putative [Ricinus communis]
5 Hb_000853_120 0.1620857164 - - PREDICTED: ethylene response sensor 1 [Jatropha curcas]
6 Hb_017434_060 0.1632948038 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
7 Hb_001989_020 0.1647058797 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
8 Hb_000703_060 0.1648239742 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
9 Hb_114310_040 0.1658151633 - - PREDICTED: purple acid phosphatase 2-like [Jatropha curcas]
10 Hb_000997_090 0.1679233739 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
11 Hb_084429_010 0.1696293733 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
12 Hb_000987_140 0.174940253 - - PREDICTED: uncharacterized protein LOC105648083 isoform X1 [Jatropha curcas]
13 Hb_001140_250 0.1751933628 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
14 Hb_000050_090 0.176792498 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
15 Hb_001396_260 0.1770505796 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
16 Hb_005702_030 0.1773465328 - - PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
17 Hb_000336_140 0.1779753346 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007101_180 0.1786224863 - - PREDICTED: DNA polymerase beta [Jatropha curcas]
19 Hb_000139_240 0.1791635663 - - PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
20 Hb_001529_060 0.1796626061 - - PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Jatropha curcas]

Gene co-expression network

sample Hb_011344_170 Hb_011344_170 Hb_005052_010 Hb_005052_010 Hb_011344_170--Hb_005052_010 Hb_007307_030 Hb_007307_030 Hb_011344_170--Hb_007307_030 Hb_164010_070 Hb_164010_070 Hb_011344_170--Hb_164010_070 Hb_000853_120 Hb_000853_120 Hb_011344_170--Hb_000853_120 Hb_017434_060 Hb_017434_060 Hb_011344_170--Hb_017434_060 Hb_001989_020 Hb_001989_020 Hb_011344_170--Hb_001989_020 Hb_001633_100 Hb_001633_100 Hb_005052_010--Hb_001633_100 Hb_114310_040 Hb_114310_040 Hb_005052_010--Hb_114310_040 Hb_000120_570 Hb_000120_570 Hb_005052_010--Hb_000120_570 Hb_001529_060 Hb_001529_060 Hb_005052_010--Hb_001529_060 Hb_003866_020 Hb_003866_020 Hb_005052_010--Hb_003866_020 Hb_007307_030--Hb_164010_070 Hb_007307_030--Hb_017434_060 Hb_011311_020 Hb_011311_020 Hb_007307_030--Hb_011311_020 Hb_000077_370 Hb_000077_370 Hb_007307_030--Hb_000077_370 Hb_000987_140 Hb_000987_140 Hb_007307_030--Hb_000987_140 Hb_002007_240 Hb_002007_240 Hb_007307_030--Hb_002007_240 Hb_000340_110 Hb_000340_110 Hb_164010_070--Hb_000340_110 Hb_144824_010 Hb_144824_010 Hb_164010_070--Hb_144824_010 Hb_124677_060 Hb_124677_060 Hb_164010_070--Hb_124677_060 Hb_006683_040 Hb_006683_040 Hb_164010_070--Hb_006683_040 Hb_001053_030 Hb_001053_030 Hb_164010_070--Hb_001053_030 Hb_000932_070 Hb_000932_070 Hb_164010_070--Hb_000932_070 Hb_000976_040 Hb_000976_040 Hb_000853_120--Hb_000976_040 Hb_002110_030 Hb_002110_030 Hb_000853_120--Hb_002110_030 Hb_156850_070 Hb_156850_070 Hb_000853_120--Hb_156850_070 Hb_000836_270 Hb_000836_270 Hb_000853_120--Hb_000836_270 Hb_000244_220 Hb_000244_220 Hb_000853_120--Hb_000244_220 Hb_009701_010 Hb_009701_010 Hb_000853_120--Hb_009701_010 Hb_017434_060--Hb_011311_020 Hb_005702_030 Hb_005702_030 Hb_017434_060--Hb_005702_030 Hb_017434_060--Hb_002007_240 Hb_017434_060--Hb_000987_140 Hb_003157_010 Hb_003157_010 Hb_001989_020--Hb_003157_010 Hb_000032_310 Hb_000032_310 Hb_001989_020--Hb_000032_310 Hb_000649_010 Hb_000649_010 Hb_001989_020--Hb_000649_010 Hb_000023_060 Hb_000023_060 Hb_001989_020--Hb_000023_060 Hb_001396_260 Hb_001396_260 Hb_001989_020--Hb_001396_260 Hb_007101_180 Hb_007101_180 Hb_001989_020--Hb_007101_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.19644 2.08059 0.191973 0.322536 1.84308 1.36095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.473192 0.520689 1.04731 1.58227 0

CAGE analysis