Hb_007307_030

Information

Type -
Description -
Location Contig7307: 57164-66550
Sequence    

Annotation

kegg
ID pop:POPTR_0016s02020g
description POPTRDRAFT_808313; hypothetical protein
nr
ID XP_012081037.1
description PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KF03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16678 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55961: 57297-60409 , PASA_asmbl_55963: 61474-61983 , PASA_asmbl_55964: 62336-66585 , PASA_asmbl_55965: 62336-66589
cDNA
(Sanger)
(ID:Location)		 006_J23.ab1: 62653-66585

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007307_030 0.0 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
2 Hb_164010_070 0.1088849118 - - Paramyosin, putative [Ricinus communis]
3 Hb_017434_060 0.1262317 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
4 Hb_011311_020 0.1267937977 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
5 Hb_000077_370 0.1323444643 - - PREDICTED: protein STABILIZED1 [Jatropha curcas]
6 Hb_000987_140 0.1344779359 - - PREDICTED: uncharacterized protein LOC105648083 isoform X1 [Jatropha curcas]
7 Hb_002007_240 0.1351874912 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
8 Hb_001989_020 0.1374043994 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
9 Hb_012799_120 0.141048572 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]
10 Hb_009701_010 0.1441940589 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
11 Hb_007101_180 0.1449915285 - - PREDICTED: DNA polymerase beta [Jatropha curcas]
12 Hb_042038_020 0.1450053982 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
13 Hb_011344_170 0.1460849394 - - PREDICTED: UDP-glucuronate 4-epimerase 4-like, partial [Camelina sativa]
14 Hb_000853_120 0.1465852764 - - PREDICTED: ethylene response sensor 1 [Jatropha curcas]
15 Hb_000336_140 0.1538990197 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000616_020 0.1555938498 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_144824_010 0.1562728617 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
18 Hb_000304_050 0.1615035793 transcription factor TF Family: GRAS PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
19 Hb_156850_070 0.1632681909 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000853_030 0.163323646 - - sucrose synthase 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_007307_030 Hb_007307_030 Hb_164010_070 Hb_164010_070 Hb_007307_030--Hb_164010_070 Hb_017434_060 Hb_017434_060 Hb_007307_030--Hb_017434_060 Hb_011311_020 Hb_011311_020 Hb_007307_030--Hb_011311_020 Hb_000077_370 Hb_000077_370 Hb_007307_030--Hb_000077_370 Hb_000987_140 Hb_000987_140 Hb_007307_030--Hb_000987_140 Hb_002007_240 Hb_002007_240 Hb_007307_030--Hb_002007_240 Hb_000340_110 Hb_000340_110 Hb_164010_070--Hb_000340_110 Hb_144824_010 Hb_144824_010 Hb_164010_070--Hb_144824_010 Hb_124677_060 Hb_124677_060 Hb_164010_070--Hb_124677_060 Hb_006683_040 Hb_006683_040 Hb_164010_070--Hb_006683_040 Hb_001053_030 Hb_001053_030 Hb_164010_070--Hb_001053_030 Hb_000932_070 Hb_000932_070 Hb_164010_070--Hb_000932_070 Hb_017434_060--Hb_011311_020 Hb_005702_030 Hb_005702_030 Hb_017434_060--Hb_005702_030 Hb_017434_060--Hb_002007_240 Hb_017434_060--Hb_000987_140 Hb_011344_170 Hb_011344_170 Hb_017434_060--Hb_011344_170 Hb_000330_040 Hb_000330_040 Hb_011311_020--Hb_000330_040 Hb_009701_010 Hb_009701_010 Hb_011311_020--Hb_009701_010 Hb_073562_010 Hb_073562_010 Hb_011311_020--Hb_073562_010 Hb_011311_020--Hb_000987_140 Hb_010874_020 Hb_010874_020 Hb_011311_020--Hb_010874_020 Hb_168697_010 Hb_168697_010 Hb_011311_020--Hb_168697_010 Hb_000616_020 Hb_000616_020 Hb_000077_370--Hb_000616_020 Hb_001247_070 Hb_001247_070 Hb_000077_370--Hb_001247_070 Hb_010578_060 Hb_010578_060 Hb_000077_370--Hb_010578_060 Hb_001268_350 Hb_001268_350 Hb_000077_370--Hb_001268_350 Hb_000390_070 Hb_000390_070 Hb_000077_370--Hb_000390_070 Hb_001930_010 Hb_001930_010 Hb_000077_370--Hb_001930_010 Hb_012573_080 Hb_012573_080 Hb_000987_140--Hb_012573_080 Hb_000836_270 Hb_000836_270 Hb_000987_140--Hb_000836_270 Hb_042038_020 Hb_042038_020 Hb_000987_140--Hb_042038_020 Hb_000418_070 Hb_000418_070 Hb_000987_140--Hb_000418_070 Hb_005914_150 Hb_005914_150 Hb_000987_140--Hb_005914_150 Hb_002007_240--Hb_009701_010 Hb_002400_400 Hb_002400_400 Hb_002007_240--Hb_002400_400 Hb_005214_090 Hb_005214_090 Hb_002007_240--Hb_005214_090 Hb_000270_760 Hb_000270_760 Hb_002007_240--Hb_000270_760 Hb_000200_280 Hb_000200_280 Hb_002007_240--Hb_000200_280 Hb_002110_030 Hb_002110_030 Hb_002007_240--Hb_002110_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.2643 95.5048 3.35596 12.6474 56.4049 48.566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8894 16.7493 48.7482 55.8535 9.71377

CAGE analysis