Hb_042038_020

Information

Type -
Description -
Location Contig42038: 3876-5075
Sequence    

Annotation

kegg
ID rcu:RCOM_0699120
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012091977.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
swissprot
ID Q0WVK7
description Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1
trembl
ID A0A067JBV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21723 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41509: 4367-4870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042038_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
2 Hb_000140_070 0.0923535202 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
3 Hb_012807_050 0.0955868479 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
4 Hb_000865_080 0.0961413714 - - arsenite-resistance protein, putative [Ricinus communis]
5 Hb_002188_110 0.0996587292 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
6 Hb_000959_040 0.1004038039 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
7 Hb_023827_040 0.1015243908 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
8 Hb_076693_020 0.1017309107 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
9 Hb_001059_100 0.1032346475 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
10 Hb_000025_360 0.1049263873 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
11 Hb_124677_060 0.1070916219 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
12 Hb_001123_290 0.107640303 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
13 Hb_000987_140 0.108183208 - - PREDICTED: uncharacterized protein LOC105648083 isoform X1 [Jatropha curcas]
14 Hb_000336_140 0.1092208833 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000441_070 0.1095542254 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
16 Hb_000291_190 0.1100208518 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
17 Hb_003467_020 0.1114780289 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 13-like [Jatropha curcas]
18 Hb_006847_040 0.1132946718 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
19 Hb_004734_060 0.1145840853 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
20 Hb_000077_370 0.1148476334 - - PREDICTED: protein STABILIZED1 [Jatropha curcas]

Gene co-expression network

sample Hb_042038_020 Hb_042038_020 Hb_000140_070 Hb_000140_070 Hb_042038_020--Hb_000140_070 Hb_012807_050 Hb_012807_050 Hb_042038_020--Hb_012807_050 Hb_000865_080 Hb_000865_080 Hb_042038_020--Hb_000865_080 Hb_002188_110 Hb_002188_110 Hb_042038_020--Hb_002188_110 Hb_000959_040 Hb_000959_040 Hb_042038_020--Hb_000959_040 Hb_023827_040 Hb_023827_040 Hb_042038_020--Hb_023827_040 Hb_001059_100 Hb_001059_100 Hb_000140_070--Hb_001059_100 Hb_003373_040 Hb_003373_040 Hb_000140_070--Hb_003373_040 Hb_076693_020 Hb_076693_020 Hb_000140_070--Hb_076693_020 Hb_001220_030 Hb_001220_030 Hb_000140_070--Hb_001220_030 Hb_093084_070 Hb_093084_070 Hb_000140_070--Hb_093084_070 Hb_006847_040 Hb_006847_040 Hb_000140_070--Hb_006847_040 Hb_004785_060 Hb_004785_060 Hb_012807_050--Hb_004785_060 Hb_000229_020 Hb_000229_020 Hb_012807_050--Hb_000229_020 Hb_010172_090 Hb_010172_090 Hb_012807_050--Hb_010172_090 Hb_012807_050--Hb_076693_020 Hb_000000_370 Hb_000000_370 Hb_012807_050--Hb_000000_370 Hb_004767_050 Hb_004767_050 Hb_012807_050--Hb_004767_050 Hb_000291_190 Hb_000291_190 Hb_000865_080--Hb_000291_190 Hb_000224_060 Hb_000224_060 Hb_000865_080--Hb_000224_060 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_000865_080--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_000865_080--Hb_000025_360 Hb_183963_030 Hb_183963_030 Hb_002188_110--Hb_183963_030 Hb_002188_110--Hb_000025_360 Hb_002188_110--Hb_000959_040 Hb_007676_100 Hb_007676_100 Hb_002188_110--Hb_007676_100 Hb_000441_070 Hb_000441_070 Hb_002188_110--Hb_000441_070 Hb_001247_070 Hb_001247_070 Hb_002188_110--Hb_001247_070 Hb_000959_040--Hb_007676_100 Hb_004718_010 Hb_004718_010 Hb_000959_040--Hb_004718_010 Hb_000959_040--Hb_183963_030 Hb_010578_060 Hb_010578_060 Hb_000959_040--Hb_010578_060 Hb_018133_050 Hb_018133_050 Hb_000959_040--Hb_018133_050 Hb_023827_040--Hb_076693_020 Hb_045793_010 Hb_045793_010 Hb_023827_040--Hb_045793_010 Hb_023827_040--Hb_000025_360 Hb_023827_040--Hb_000224_060 Hb_001610_110 Hb_001610_110 Hb_023827_040--Hb_001610_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.62659 8.50326 1.154 1.59233 4.31565 7.03508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.02852 3.03177 4.09635 3.2216 1.32093

CAGE analysis