Hb_000270_760

Information

Type -
Description -
Location Contig270: 626112-632309
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08500g
description POPTRDRAFT_575133; hypothetical protein
nr
ID XP_012080101.1
description PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Jatropha curcas]
swissprot
ID O82504
description RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1
trembl
ID A0A067K4I1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11502 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-dependent rna polymerase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28275: 626119-632131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_760 0.0 - - PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Jatropha curcas]
2 Hb_000327_340 0.0706027201 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
3 Hb_000318_510 0.0857757356 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
4 Hb_001700_040 0.0865136605 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
5 Hb_000244_220 0.0909773535 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
6 Hb_000856_310 0.0910200849 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
7 Hb_003531_060 0.0961085713 - - unnamed protein product [Coffea canephora]
8 Hb_000206_250 0.097653886 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
9 Hb_000616_020 0.0983691008 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_004225_020 0.1064153136 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000000_370 0.1070732699 transcription factor TF Family: BES1 PREDICTED: protein BRASSINAZOLE-RESISTANT 1 [Jatropha curcas]
12 Hb_002007_240 0.1086899278 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
13 Hb_000283_070 0.1087705335 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
14 Hb_002131_020 0.1089771985 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
15 Hb_004602_040 0.1091814298 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
16 Hb_003449_070 0.1095471886 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
17 Hb_010080_060 0.1099902081 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_000071_030 0.1107200185 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
19 Hb_001913_060 0.1110523849 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
20 Hb_000077_370 0.1116169616 - - PREDICTED: protein STABILIZED1 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_760 Hb_000270_760 Hb_000327_340 Hb_000327_340 Hb_000270_760--Hb_000327_340 Hb_000318_510 Hb_000318_510 Hb_000270_760--Hb_000318_510 Hb_001700_040 Hb_001700_040 Hb_000270_760--Hb_001700_040 Hb_000244_220 Hb_000244_220 Hb_000270_760--Hb_000244_220 Hb_000856_310 Hb_000856_310 Hb_000270_760--Hb_000856_310 Hb_003531_060 Hb_003531_060 Hb_000270_760--Hb_003531_060 Hb_000616_020 Hb_000616_020 Hb_000327_340--Hb_000616_020 Hb_000327_340--Hb_000244_220 Hb_001268_350 Hb_001268_350 Hb_000327_340--Hb_001268_350 Hb_005699_090 Hb_005699_090 Hb_000327_340--Hb_005699_090 Hb_000343_030 Hb_000343_030 Hb_000327_340--Hb_000343_030 Hb_000283_070 Hb_000283_070 Hb_000318_510--Hb_000283_070 Hb_000318_510--Hb_001700_040 Hb_001143_160 Hb_001143_160 Hb_000318_510--Hb_001143_160 Hb_007163_090 Hb_007163_090 Hb_000318_510--Hb_007163_090 Hb_000347_180 Hb_000347_180 Hb_000318_510--Hb_000347_180 Hb_004545_140 Hb_004545_140 Hb_000318_510--Hb_004545_140 Hb_000457_260 Hb_000457_260 Hb_001700_040--Hb_000457_260 Hb_001700_040--Hb_000283_070 Hb_000878_010 Hb_000878_010 Hb_001700_040--Hb_000878_010 Hb_005679_050 Hb_005679_050 Hb_001700_040--Hb_005679_050 Hb_000101_240 Hb_000101_240 Hb_001700_040--Hb_000101_240 Hb_000244_220--Hb_000856_310 Hb_004602_040 Hb_004602_040 Hb_000244_220--Hb_004602_040 Hb_000046_010 Hb_000046_010 Hb_000244_220--Hb_000046_010 Hb_001912_100 Hb_001912_100 Hb_000244_220--Hb_001912_100 Hb_002163_010 Hb_002163_010 Hb_000244_220--Hb_002163_010 Hb_000856_310--Hb_004602_040 Hb_005214_090 Hb_005214_090 Hb_000856_310--Hb_005214_090 Hb_000369_130 Hb_000369_130 Hb_000856_310--Hb_000369_130 Hb_017862_020 Hb_017862_020 Hb_000856_310--Hb_017862_020 Hb_000739_100 Hb_000739_100 Hb_000856_310--Hb_000739_100 Hb_005321_020 Hb_005321_020 Hb_003531_060--Hb_005321_020 Hb_006831_110 Hb_006831_110 Hb_003531_060--Hb_006831_110 Hb_003531_060--Hb_000283_070 Hb_000107_500 Hb_000107_500 Hb_003531_060--Hb_000107_500 Hb_011030_010 Hb_011030_010 Hb_003531_060--Hb_011030_010 Hb_033187_050 Hb_033187_050 Hb_003531_060--Hb_033187_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.94 13.154 2.85263 5.54502 9.29173 15.7971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.34126 3.91996 11.598 13.1487 4.88035

CAGE analysis