Hb_000327_340

Information

Type -
Description -
Location Contig327: 397141-401542
Sequence    

Annotation

kegg
ID rcu:RCOM_0626240
description ankyrin repeat-containing protein, putative
nr
ID XP_012073180.1
description PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9SLC2
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0626240 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing protein at3g12360-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34411: 397587-398041 , PASA_asmbl_34412: 398042-400519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_340 0.0 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
2 Hb_000616_020 0.0686743094 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_000270_760 0.0706027201 - - PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Jatropha curcas]
4 Hb_000244_220 0.0772973595 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
5 Hb_001268_350 0.0828323069 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
6 Hb_005699_090 0.0848287866 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
7 Hb_000343_030 0.0871344897 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
8 Hb_004218_030 0.0886992772 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001913_060 0.0899141558 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
10 Hb_001700_040 0.0982137811 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
11 Hb_000856_310 0.0989277491 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
12 Hb_000318_510 0.0998890379 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
13 Hb_000077_370 0.100294504 - - PREDICTED: protein STABILIZED1 [Jatropha curcas]
14 Hb_002107_070 0.100775302 - - hypothetical protein RCOM_1598630 [Ricinus communis]
15 Hb_001247_070 0.1008901349 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
16 Hb_003531_060 0.1014527174 - - unnamed protein product [Coffea canephora]
17 Hb_000107_040 0.1034518944 - - nuclear pore complex protein nup153, putative [Ricinus communis]
18 Hb_004602_040 0.1053628503 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
19 Hb_007576_120 0.1066666643 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
20 Hb_000088_130 0.1069186201 - - hypothetical protein JCGZ_02447 [Jatropha curcas]

Gene co-expression network

sample Hb_000327_340 Hb_000327_340 Hb_000616_020 Hb_000616_020 Hb_000327_340--Hb_000616_020 Hb_000270_760 Hb_000270_760 Hb_000327_340--Hb_000270_760 Hb_000244_220 Hb_000244_220 Hb_000327_340--Hb_000244_220 Hb_001268_350 Hb_001268_350 Hb_000327_340--Hb_001268_350 Hb_005699_090 Hb_005699_090 Hb_000327_340--Hb_005699_090 Hb_000343_030 Hb_000343_030 Hb_000327_340--Hb_000343_030 Hb_000077_370 Hb_000077_370 Hb_000616_020--Hb_000077_370 Hb_001247_070 Hb_001247_070 Hb_000616_020--Hb_001247_070 Hb_000616_020--Hb_001268_350 Hb_000616_020--Hb_000270_760 Hb_006847_040 Hb_006847_040 Hb_000616_020--Hb_006847_040 Hb_000318_510 Hb_000318_510 Hb_000270_760--Hb_000318_510 Hb_001700_040 Hb_001700_040 Hb_000270_760--Hb_001700_040 Hb_000270_760--Hb_000244_220 Hb_000856_310 Hb_000856_310 Hb_000270_760--Hb_000856_310 Hb_003531_060 Hb_003531_060 Hb_000270_760--Hb_003531_060 Hb_000244_220--Hb_000856_310 Hb_004602_040 Hb_004602_040 Hb_000244_220--Hb_004602_040 Hb_000046_010 Hb_000046_010 Hb_000244_220--Hb_000046_010 Hb_001912_100 Hb_001912_100 Hb_000244_220--Hb_001912_100 Hb_002163_010 Hb_002163_010 Hb_000244_220--Hb_002163_010 Hb_004718_010 Hb_004718_010 Hb_001268_350--Hb_004718_010 Hb_000035_290 Hb_000035_290 Hb_001268_350--Hb_000035_290 Hb_001268_350--Hb_001247_070 Hb_002784_110 Hb_002784_110 Hb_001268_350--Hb_002784_110 Hb_001268_350--Hb_005699_090 Hb_014267_010 Hb_014267_010 Hb_001268_350--Hb_014267_010 Hb_005699_090--Hb_000035_290 Hb_000563_640 Hb_000563_640 Hb_005699_090--Hb_000563_640 Hb_005699_090--Hb_002784_110 Hb_003544_180 Hb_003544_180 Hb_005699_090--Hb_003544_180 Hb_025194_040 Hb_025194_040 Hb_005699_090--Hb_025194_040 Hb_000300_440 Hb_000300_440 Hb_000343_030--Hb_000300_440 Hb_004218_030 Hb_004218_030 Hb_000343_030--Hb_004218_030 Hb_100215_010 Hb_100215_010 Hb_000343_030--Hb_100215_010 Hb_003952_150 Hb_003952_150 Hb_000343_030--Hb_003952_150 Hb_001621_130 Hb_001621_130 Hb_000343_030--Hb_001621_130 Hb_000920_210 Hb_000920_210 Hb_000343_030--Hb_000920_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.5777 92.4908 14.6274 35.5265 78.2266 84.2328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.2392 30.1805 62.1275 92.2161 44.3002

CAGE analysis