Hb_010874_020

Information

Type -
Description -
Location Contig10874: 28648-34042
Sequence    

Annotation

kegg
ID pmum:103319268
description uncharacterized LOC103319268
nr
ID XP_012075479.1
description PREDICTED: uncharacterized protein LOC105636745 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10948 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02641: 29062-29636 , PASA_asmbl_02642: 29801-30033 , PASA_asmbl_02644: 31110-34017 , PASA_asmbl_02645: 31556-34017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010874_020 0.0 - - PREDICTED: uncharacterized protein LOC105636745 [Jatropha curcas]
2 Hb_168697_010 0.0867710331 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
3 Hb_006938_080 0.0884036146 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
4 Hb_002276_130 0.0955323138 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
5 Hb_000000_370 0.0969654473 transcription factor TF Family: BES1 PREDICTED: protein BRASSINAZOLE-RESISTANT 1 [Jatropha curcas]
6 Hb_012490_080 0.0986236428 - - threonine synthase, putative [Ricinus communis]
7 Hb_001617_050 0.1002539596 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
8 Hb_000866_170 0.107235587 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_002218_010 0.1073050485 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
10 Hb_003976_030 0.1084940161 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
11 Hb_004545_140 0.1085482126 - - hypothetical protein JCGZ_23405 [Jatropha curcas]
12 Hb_000011_330 0.1099732699 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
13 Hb_001956_200 0.1116906906 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
14 Hb_001584_150 0.113221628 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
15 Hb_002311_040 0.1144378366 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
16 Hb_011311_020 0.1145172008 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
17 Hb_000213_100 0.1145248597 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
18 Hb_002942_100 0.1151779483 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
19 Hb_048219_010 0.1163252498 - - coronatine-insensitive 1 [Hevea brasiliensis]
20 Hb_000646_050 0.1165389389 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]

Gene co-expression network

sample Hb_010874_020 Hb_010874_020 Hb_168697_010 Hb_168697_010 Hb_010874_020--Hb_168697_010 Hb_006938_080 Hb_006938_080 Hb_010874_020--Hb_006938_080 Hb_002276_130 Hb_002276_130 Hb_010874_020--Hb_002276_130 Hb_000000_370 Hb_000000_370 Hb_010874_020--Hb_000000_370 Hb_012490_080 Hb_012490_080 Hb_010874_020--Hb_012490_080 Hb_001617_050 Hb_001617_050 Hb_010874_020--Hb_001617_050 Hb_000140_230 Hb_000140_230 Hb_168697_010--Hb_000140_230 Hb_000680_050 Hb_000680_050 Hb_168697_010--Hb_000680_050 Hb_048219_010 Hb_048219_010 Hb_168697_010--Hb_048219_010 Hb_003020_050 Hb_003020_050 Hb_168697_010--Hb_003020_050 Hb_009486_200 Hb_009486_200 Hb_168697_010--Hb_009486_200 Hb_000245_040 Hb_000245_040 Hb_006938_080--Hb_000245_040 Hb_002809_050 Hb_002809_050 Hb_006938_080--Hb_002809_050 Hb_000646_050 Hb_000646_050 Hb_006938_080--Hb_000646_050 Hb_000866_170 Hb_000866_170 Hb_006938_080--Hb_000866_170 Hb_000107_490 Hb_000107_490 Hb_006938_080--Hb_000107_490 Hb_000395_190 Hb_000395_190 Hb_006938_080--Hb_000395_190 Hb_002276_130--Hb_000866_170 Hb_002276_130--Hb_000245_040 Hb_002276_130--Hb_006938_080 Hb_000107_420 Hb_000107_420 Hb_002276_130--Hb_000107_420 Hb_000206_240 Hb_000206_240 Hb_002276_130--Hb_000206_240 Hb_004837_040 Hb_004837_040 Hb_000000_370--Hb_004837_040 Hb_004785_060 Hb_004785_060 Hb_000000_370--Hb_004785_060 Hb_000859_060 Hb_000859_060 Hb_000000_370--Hb_000859_060 Hb_000085_100 Hb_000085_100 Hb_000000_370--Hb_000085_100 Hb_000062_250 Hb_000062_250 Hb_000000_370--Hb_000062_250 Hb_012807_050 Hb_012807_050 Hb_000000_370--Hb_012807_050 Hb_012490_080--Hb_000107_490 Hb_000406_140 Hb_000406_140 Hb_012490_080--Hb_000406_140 Hb_012490_080--Hb_006938_080 Hb_012490_080--Hb_000866_170 Hb_000890_210 Hb_000890_210 Hb_012490_080--Hb_000890_210 Hb_012490_080--Hb_000646_050 Hb_005348_140 Hb_005348_140 Hb_001617_050--Hb_005348_140 Hb_010128_080 Hb_010128_080 Hb_001617_050--Hb_010128_080 Hb_001617_050--Hb_000646_050 Hb_050622_050 Hb_050622_050 Hb_001617_050--Hb_050622_050 Hb_000538_270 Hb_000538_270 Hb_001617_050--Hb_000538_270 Hb_001226_040 Hb_001226_040 Hb_001617_050--Hb_001226_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.8119 6.54003 1.81595 3.51688 3.95938 4.66435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.8552 3.09741 10.0761 6.28312 2.49702

CAGE analysis