Hb_002400_400

Information

Type -
Description -
Location Contig2400: 271436-277716
Sequence    

Annotation

kegg
ID rcu:RCOM_0923020
description WD-repeat protein, putative
nr
ID XP_012076511.1
description PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
swissprot
ID Q0WV90
description Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3
trembl
ID A0A067KBG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07132 PE=4 SV=1
Gene Ontology
ID GO:0006355
description wd-40 repeat family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25191: 271647-272519 , PASA_asmbl_25192: 272839-273900 , PASA_asmbl_25193: 275553-276393 , PASA_asmbl_25194: 276559-277508 , PASA_asmbl_25195: 276892-277435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_400 0.0 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
2 Hb_011512_090 0.0996834184 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
3 Hb_002007_240 0.1030028796 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
4 Hb_000244_220 0.1099517538 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
5 Hb_005214_090 0.1102743163 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
6 Hb_000200_280 0.1183949828 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
7 Hb_000976_040 0.1215839021 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
8 Hb_166236_010 0.1237567695 - - -
9 Hb_001472_120 0.1237874538 - - -
10 Hb_000856_310 0.1245483293 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
11 Hb_111198_020 0.12572949 - - hypothetical protein JCGZ_06907 [Jatropha curcas]
12 Hb_000227_060 0.1292259354 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
13 Hb_011218_040 0.1298490263 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
14 Hb_009701_010 0.1301152562 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
15 Hb_002163_010 0.1320225696 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
16 Hb_015292_030 0.1363093296 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
17 Hb_001912_100 0.1367877515 - - PREDICTED: uncharacterized protein LOC105636609 [Jatropha curcas]
18 Hb_001140_250 0.1371998511 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
19 Hb_005122_080 0.137227297 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
20 Hb_089497_010 0.1380497156 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_002400_400 Hb_002400_400 Hb_011512_090 Hb_011512_090 Hb_002400_400--Hb_011512_090 Hb_002007_240 Hb_002007_240 Hb_002400_400--Hb_002007_240 Hb_000244_220 Hb_000244_220 Hb_002400_400--Hb_000244_220 Hb_005214_090 Hb_005214_090 Hb_002400_400--Hb_005214_090 Hb_000200_280 Hb_000200_280 Hb_002400_400--Hb_000200_280 Hb_000976_040 Hb_000976_040 Hb_002400_400--Hb_000976_040 Hb_011512_090--Hb_000976_040 Hb_002110_030 Hb_002110_030 Hb_011512_090--Hb_002110_030 Hb_011512_090--Hb_000200_280 Hb_002005_090 Hb_002005_090 Hb_011512_090--Hb_002005_090 Hb_001621_130 Hb_001621_130 Hb_011512_090--Hb_001621_130 Hb_009701_010 Hb_009701_010 Hb_002007_240--Hb_009701_010 Hb_002007_240--Hb_005214_090 Hb_000270_760 Hb_000270_760 Hb_002007_240--Hb_000270_760 Hb_002007_240--Hb_000200_280 Hb_002007_240--Hb_002110_030 Hb_000856_310 Hb_000856_310 Hb_000244_220--Hb_000856_310 Hb_004602_040 Hb_004602_040 Hb_000244_220--Hb_004602_040 Hb_000046_010 Hb_000046_010 Hb_000244_220--Hb_000046_010 Hb_001912_100 Hb_001912_100 Hb_000244_220--Hb_001912_100 Hb_002163_010 Hb_002163_010 Hb_000244_220--Hb_002163_010 Hb_000327_340 Hb_000327_340 Hb_000244_220--Hb_000327_340 Hb_005214_090--Hb_000856_310 Hb_005214_090--Hb_000244_220 Hb_001575_010 Hb_001575_010 Hb_005214_090--Hb_001575_010 Hb_000627_180 Hb_000627_180 Hb_005214_090--Hb_000627_180 Hb_156850_070 Hb_156850_070 Hb_005214_090--Hb_156850_070 Hb_089140_030 Hb_089140_030 Hb_005214_090--Hb_089140_030 Hb_000200_280--Hb_000976_040 Hb_002827_020 Hb_002827_020 Hb_000200_280--Hb_002827_020 Hb_000200_280--Hb_089140_030 Hb_011716_090 Hb_011716_090 Hb_000200_280--Hb_011716_090 Hb_000200_280--Hb_002110_030 Hb_000853_120 Hb_000853_120 Hb_000976_040--Hb_000853_120 Hb_000976_040--Hb_156850_070 Hb_000640_130 Hb_000640_130 Hb_000976_040--Hb_000640_130 Hb_005143_030 Hb_005143_030 Hb_000976_040--Hb_005143_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.36561 12.5237 2.23779 2.56874 8.7133 9.99786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.59891 7.42995 5.08506 13.919 1.87706

CAGE analysis