Hb_001529_060

Information

Type -
Description -
Location Contig1529: 43736-50849
Sequence    

Annotation

kegg
ID rcu:RCOM_0754170
description U4/U6.U5 tri-snRNP-associated protein, putative
nr
ID XP_012074044.1
description PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KX07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08658 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13135: 44082-50458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001529_060 0.0 - - PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Jatropha curcas]
2 Hb_009178_020 0.1034209271 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
3 Hb_001009_290 0.1128383584 - - PREDICTED: elongator complex protein 3-like [Populus euphratica]
4 Hb_000685_080 0.1162611613 - - protein binding protein, putative [Ricinus communis]
5 Hb_002849_080 0.1176403721 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
6 Hb_148209_020 0.1261106004 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
7 Hb_000317_150 0.127286695 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
8 Hb_045046_010 0.1273775506 transcription factor TF Family: TUB hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
9 Hb_002078_420 0.1298630159 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
10 Hb_002804_050 0.131252553 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
11 Hb_003126_030 0.1316039867 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000313_340 0.1329372143 - - DNA repair protein xp-E, putative [Ricinus communis]
13 Hb_043668_010 0.1332500615 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_015763_020 0.1337494317 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
15 Hb_001522_010 0.1350743159 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
16 Hb_001117_190 0.1367669371 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
17 Hb_005038_020 0.1375243513 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_002977_010 0.1391005975 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
19 Hb_003125_060 0.1396634527 - - PREDICTED: snurportin-1 [Jatropha curcas]
20 Hb_000116_570 0.1399970153 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_001529_060 Hb_001529_060 Hb_009178_020 Hb_009178_020 Hb_001529_060--Hb_009178_020 Hb_001009_290 Hb_001009_290 Hb_001529_060--Hb_001009_290 Hb_000685_080 Hb_000685_080 Hb_001529_060--Hb_000685_080 Hb_002849_080 Hb_002849_080 Hb_001529_060--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_001529_060--Hb_148209_020 Hb_000317_150 Hb_000317_150 Hb_001529_060--Hb_000317_150 Hb_000953_030 Hb_000953_030 Hb_009178_020--Hb_000953_030 Hb_001474_030 Hb_001474_030 Hb_009178_020--Hb_001474_030 Hb_001473_080 Hb_001473_080 Hb_009178_020--Hb_001473_080 Hb_009178_020--Hb_000685_080 Hb_000504_160 Hb_000504_160 Hb_009178_020--Hb_000504_160 Hb_000186_260 Hb_000186_260 Hb_009178_020--Hb_000186_260 Hb_001522_010 Hb_001522_010 Hb_001009_290--Hb_001522_010 Hb_009558_040 Hb_009558_040 Hb_001009_290--Hb_009558_040 Hb_007885_070 Hb_007885_070 Hb_001009_290--Hb_007885_070 Hb_001009_290--Hb_009178_020 Hb_006829_090 Hb_006829_090 Hb_001009_290--Hb_006829_090 Hb_003125_060 Hb_003125_060 Hb_000685_080--Hb_003125_060 Hb_009646_050 Hb_009646_050 Hb_000685_080--Hb_009646_050 Hb_005399_020 Hb_005399_020 Hb_000685_080--Hb_005399_020 Hb_000016_280 Hb_000016_280 Hb_000685_080--Hb_000016_280 Hb_002977_010 Hb_002977_010 Hb_000685_080--Hb_002977_010 Hb_002133_030 Hb_002133_030 Hb_000685_080--Hb_002133_030 Hb_002849_080--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002849_080--Hb_006316_070 Hb_002849_080--Hb_002977_010 Hb_002609_010 Hb_002609_010 Hb_002849_080--Hb_002609_010 Hb_011465_030 Hb_011465_030 Hb_002849_080--Hb_011465_030 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020 Hb_012395_160 Hb_012395_160 Hb_148209_020--Hb_012395_160 Hb_148209_020--Hb_006316_070 Hb_002477_150 Hb_002477_150 Hb_148209_020--Hb_002477_150 Hb_148209_020--Hb_002977_010 Hb_148209_020--Hb_005399_020 Hb_003540_160 Hb_003540_160 Hb_000317_150--Hb_003540_160 Hb_001117_190 Hb_001117_190 Hb_000317_150--Hb_001117_190 Hb_140049_020 Hb_140049_020 Hb_000317_150--Hb_140049_020 Hb_000753_100 Hb_000753_100 Hb_000317_150--Hb_000753_100 Hb_005539_190 Hb_005539_190 Hb_000317_150--Hb_005539_190 Hb_000313_340 Hb_000313_340 Hb_000317_150--Hb_000313_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.5474 68.5529 18.9452 3.1499 84.954 54.4408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.462 17.3049 22.0158 32.986 9.05313

CAGE analysis