Hb_009558_040

Information

Type transcription factor
Description TF Family: MYB
Location Contig9558: 49638-52093
Sequence    

Annotation

kegg
ID pvu:PHAVU_008G102000g
description hypothetical protein
nr
ID XP_007140316.1
description hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
swissprot
ID Q9S7G7
description Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1
trembl
ID V7B420
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G102000g PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009558_040 0.0 transcription factor TF Family: MYB hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
2 Hb_011512_060 0.0926571071 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
3 Hb_000317_150 0.0968537604 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
4 Hb_027073_060 0.098675941 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
5 Hb_002499_070 0.1010373187 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
6 Hb_007885_070 0.1018690116 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
7 Hb_003540_160 0.104617271 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
8 Hb_001902_060 0.1078330691 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
9 Hb_001009_290 0.1079402554 - - PREDICTED: elongator complex protein 3-like [Populus euphratica]
10 Hb_001083_030 0.1097044772 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
11 Hb_001117_190 0.1098323722 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
12 Hb_004656_060 0.1129140021 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
13 Hb_002411_120 0.1142537982 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
14 Hb_000953_030 0.1147983326 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
15 Hb_004899_030 0.1153035204 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
16 Hb_019153_020 0.1157203217 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
17 Hb_002659_060 0.1159107701 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
18 Hb_000422_140 0.1161973976 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
19 Hb_000365_140 0.1169252187 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
20 Hb_000529_260 0.1170142882 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]

Gene co-expression network

sample Hb_009558_040 Hb_009558_040 Hb_011512_060 Hb_011512_060 Hb_009558_040--Hb_011512_060 Hb_000317_150 Hb_000317_150 Hb_009558_040--Hb_000317_150 Hb_027073_060 Hb_027073_060 Hb_009558_040--Hb_027073_060 Hb_002499_070 Hb_002499_070 Hb_009558_040--Hb_002499_070 Hb_007885_070 Hb_007885_070 Hb_009558_040--Hb_007885_070 Hb_003540_160 Hb_003540_160 Hb_009558_040--Hb_003540_160 Hb_000856_140 Hb_000856_140 Hb_011512_060--Hb_000856_140 Hb_000714_050 Hb_000714_050 Hb_011512_060--Hb_000714_050 Hb_010315_090 Hb_010315_090 Hb_011512_060--Hb_010315_090 Hb_008595_010 Hb_008595_010 Hb_011512_060--Hb_008595_010 Hb_006449_050 Hb_006449_050 Hb_011512_060--Hb_006449_050 Hb_000317_150--Hb_003540_160 Hb_001117_190 Hb_001117_190 Hb_000317_150--Hb_001117_190 Hb_140049_020 Hb_140049_020 Hb_000317_150--Hb_140049_020 Hb_000753_100 Hb_000753_100 Hb_000317_150--Hb_000753_100 Hb_005539_190 Hb_005539_190 Hb_000317_150--Hb_005539_190 Hb_000313_340 Hb_000313_340 Hb_000317_150--Hb_000313_340 Hb_000096_180 Hb_000096_180 Hb_027073_060--Hb_000096_180 Hb_027073_060--Hb_007885_070 Hb_025477_060 Hb_025477_060 Hb_027073_060--Hb_025477_060 Hb_000250_070 Hb_000250_070 Hb_027073_060--Hb_000250_070 Hb_000357_080 Hb_000357_080 Hb_027073_060--Hb_000357_080 Hb_002043_170 Hb_002043_170 Hb_027073_060--Hb_002043_170 Hb_004162_280 Hb_004162_280 Hb_002499_070--Hb_004162_280 Hb_144787_030 Hb_144787_030 Hb_002499_070--Hb_144787_030 Hb_005895_040 Hb_005895_040 Hb_002499_070--Hb_005895_040 Hb_001902_060 Hb_001902_060 Hb_002499_070--Hb_001902_060 Hb_002411_120 Hb_002411_120 Hb_002499_070--Hb_002411_120 Hb_000152_340 Hb_000152_340 Hb_002499_070--Hb_000152_340 Hb_002221_050 Hb_002221_050 Hb_007885_070--Hb_002221_050 Hb_000417_160 Hb_000417_160 Hb_007885_070--Hb_000417_160 Hb_000529_260 Hb_000529_260 Hb_007885_070--Hb_000529_260 Hb_019153_020 Hb_019153_020 Hb_007885_070--Hb_019153_020 Hb_000320_380 Hb_000320_380 Hb_007885_070--Hb_000320_380 Hb_000424_010 Hb_000424_010 Hb_007885_070--Hb_000424_010 Hb_003540_160--Hb_001117_190 Hb_003540_160--Hb_005539_190 Hb_003540_160--Hb_140049_020 Hb_003540_160--Hb_000753_100 Hb_007943_120 Hb_007943_120 Hb_003540_160--Hb_007943_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1904 11.847 5.78085 2.02574 23.2755 11.5148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.72873 3.41563 4.76226 4.58022 5.27041

CAGE analysis