Hb_027073_060

Information

Type -
Description -
Location Contig27073: 64013-72170
Sequence    

Annotation

kegg
ID rcu:RCOM_0322290
description galactolipid galactosyltransferase, putative
nr
ID XP_012074320.1
description PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q6DW74
description Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Lotus japonicus GN=DGD1 PE=2 SV=1
trembl
ID A0A067KV18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08759 PE=4 SV=1
Gene Ontology
ID GO:0005739
description digalactosyldiacylglycerol synthase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28398: 63913-64898 , PASA_asmbl_28399: 63882-69714 , PASA_asmbl_28400: 64979-65241 , PASA_asmbl_28402: 70047-71975
cDNA
(Sanger)
(ID:Location)		 003_E13.ab1: 63913-64685

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027073_060 0.0 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
2 Hb_000096_180 0.0688223186 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
3 Hb_007885_070 0.0771089969 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
4 Hb_025477_060 0.0825594646 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
5 Hb_000250_070 0.0846485217 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
6 Hb_000357_080 0.0864315993 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic [Jatropha curcas]
7 Hb_002043_170 0.0865983338 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
8 Hb_002411_120 0.0902859918 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
9 Hb_002471_210 0.0918413398 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
10 Hb_002291_070 0.0928224468 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
11 Hb_000475_020 0.0945641609 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
12 Hb_000424_010 0.0967670872 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
13 Hb_004128_080 0.0969095352 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
14 Hb_000594_020 0.0980902348 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
15 Hb_015026_050 0.0980968389 - - XPA-binding protein, putative [Ricinus communis]
16 Hb_000529_260 0.0981384823 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
17 Hb_004096_020 0.098213673 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
18 Hb_002221_050 0.09847695 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
19 Hb_033594_020 0.0985249885 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
20 Hb_001975_020 0.0985904138 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]

Gene co-expression network

sample Hb_027073_060 Hb_027073_060 Hb_000096_180 Hb_000096_180 Hb_027073_060--Hb_000096_180 Hb_007885_070 Hb_007885_070 Hb_027073_060--Hb_007885_070 Hb_025477_060 Hb_025477_060 Hb_027073_060--Hb_025477_060 Hb_000250_070 Hb_000250_070 Hb_027073_060--Hb_000250_070 Hb_000357_080 Hb_000357_080 Hb_027073_060--Hb_000357_080 Hb_002043_170 Hb_002043_170 Hb_027073_060--Hb_002043_170 Hb_000096_180--Hb_025477_060 Hb_002291_070 Hb_002291_070 Hb_000096_180--Hb_002291_070 Hb_000096_180--Hb_002043_170 Hb_001437_100 Hb_001437_100 Hb_000096_180--Hb_001437_100 Hb_000002_440 Hb_000002_440 Hb_000096_180--Hb_000002_440 Hb_002221_050 Hb_002221_050 Hb_007885_070--Hb_002221_050 Hb_000417_160 Hb_000417_160 Hb_007885_070--Hb_000417_160 Hb_000529_260 Hb_000529_260 Hb_007885_070--Hb_000529_260 Hb_019153_020 Hb_019153_020 Hb_007885_070--Hb_019153_020 Hb_000320_380 Hb_000320_380 Hb_007885_070--Hb_000320_380 Hb_000424_010 Hb_000424_010 Hb_007885_070--Hb_000424_010 Hb_025477_060--Hb_000002_440 Hb_147737_010 Hb_147737_010 Hb_025477_060--Hb_147737_010 Hb_000046_450 Hb_000046_450 Hb_025477_060--Hb_000046_450 Hb_046615_020 Hb_046615_020 Hb_025477_060--Hb_046615_020 Hb_001975_020 Hb_001975_020 Hb_025477_060--Hb_001975_020 Hb_007849_020 Hb_007849_020 Hb_000250_070--Hb_007849_020 Hb_000475_020 Hb_000475_020 Hb_000250_070--Hb_000475_020 Hb_002471_210 Hb_002471_210 Hb_000250_070--Hb_002471_210 Hb_000250_070--Hb_002291_070 Hb_006816_300 Hb_006816_300 Hb_000250_070--Hb_006816_300 Hb_001811_120 Hb_001811_120 Hb_000250_070--Hb_001811_120 Hb_004096_020 Hb_004096_020 Hb_000357_080--Hb_004096_020 Hb_175338_020 Hb_175338_020 Hb_000357_080--Hb_175338_020 Hb_000357_080--Hb_046615_020 Hb_000357_080--Hb_025477_060 Hb_000327_310 Hb_000327_310 Hb_000357_080--Hb_000327_310 Hb_000357_080--Hb_007885_070 Hb_002043_170--Hb_001437_100 Hb_000640_320 Hb_000640_320 Hb_002043_170--Hb_000640_320 Hb_002043_170--Hb_046615_020 Hb_002883_010 Hb_002883_010 Hb_002043_170--Hb_002883_010 Hb_000035_040 Hb_000035_040 Hb_002043_170--Hb_000035_040 Hb_000335_010 Hb_000335_010 Hb_002043_170--Hb_000335_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.6338 45.3927 16.2834 9.62463 77.8004 69.7005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1268 11.1554 25.5428 18.0968 28.1335

CAGE analysis