Hb_000953_140

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig953: 138885-142171
Sequence    

Annotation

kegg
ID tcc:TCM_022457
description Duplicated homeodomain-like superfamily protein, putative
nr
ID XP_007027628.1
description Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
swissprot
ID Q9LZS0
description Trihelix transcription factor PTL OS=Arabidopsis thaliana GN=PTL PE=2 SV=1
trembl
ID A0A061ESW5
description Duplicated homeodomain-like superfamily protein, putative OS=Theobroma cacao GN=TCM_022457 PE=4 SV=1
Gene Ontology
ID GO:0005488
description trihelix transcription factor ptl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63471: 138923-139279 , PASA_asmbl_63473: 139814-139992 , PASA_asmbl_63474: 140283-141939 , PASA_asmbl_63475: 141940-142301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000953_140 0.0 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
2 Hb_004931_040 0.0875434856 - - splicing factor-related family protein [Populus trichocarpa]
3 Hb_000926_270 0.0958050612 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
4 Hb_160818_010 0.0979956808 - - -
5 Hb_001776_080 0.1017913521 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
6 Hb_002149_040 0.1027771419 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003050_090 0.1068238344 - - lupus la ribonucleoprotein, putative [Ricinus communis]
8 Hb_029281_010 0.1079974583 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
9 Hb_001439_180 0.1086839359 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
10 Hb_002377_050 0.1101610179 - - Agmatine deiminase, putative [Ricinus communis]
11 Hb_002675_190 0.1102487266 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_001633_110 0.1117137178 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
13 Hb_002169_010 0.1123601631 - - PREDICTED: la-related protein 6B [Jatropha curcas]
14 Hb_017987_090 0.1146452868 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
15 Hb_003506_040 0.1161151535 - - hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]
16 Hb_005016_030 0.1179941935 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
17 Hb_000176_140 0.1211438699 - - PREDICTED: bystin [Jatropha curcas]
18 Hb_001009_050 0.1230699747 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
19 Hb_000270_450 0.1258836872 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
20 Hb_000163_290 0.1263199689 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]

Gene co-expression network

sample Hb_000953_140 Hb_000953_140 Hb_004931_040 Hb_004931_040 Hb_000953_140--Hb_004931_040 Hb_000926_270 Hb_000926_270 Hb_000953_140--Hb_000926_270 Hb_160818_010 Hb_160818_010 Hb_000953_140--Hb_160818_010 Hb_001776_080 Hb_001776_080 Hb_000953_140--Hb_001776_080 Hb_002149_040 Hb_002149_040 Hb_000953_140--Hb_002149_040 Hb_003050_090 Hb_003050_090 Hb_000953_140--Hb_003050_090 Hb_002675_190 Hb_002675_190 Hb_004931_040--Hb_002675_190 Hb_001439_180 Hb_001439_180 Hb_004931_040--Hb_001439_180 Hb_004931_040--Hb_160818_010 Hb_000331_480 Hb_000331_480 Hb_004931_040--Hb_000331_480 Hb_001034_020 Hb_001034_020 Hb_004931_040--Hb_001034_020 Hb_000926_270--Hb_002149_040 Hb_005016_030 Hb_005016_030 Hb_000926_270--Hb_005016_030 Hb_000926_270--Hb_001776_080 Hb_000692_260 Hb_000692_260 Hb_000926_270--Hb_000692_260 Hb_001016_060 Hb_001016_060 Hb_000926_270--Hb_001016_060 Hb_000491_080 Hb_000491_080 Hb_160818_010--Hb_000491_080 Hb_002169_010 Hb_002169_010 Hb_160818_010--Hb_002169_010 Hb_160818_010--Hb_001776_080 Hb_000320_440 Hb_000320_440 Hb_160818_010--Hb_000320_440 Hb_011496_010 Hb_011496_010 Hb_160818_010--Hb_011496_010 Hb_005314_010 Hb_005314_010 Hb_160818_010--Hb_005314_010 Hb_000176_140 Hb_000176_140 Hb_001776_080--Hb_000176_140 Hb_001776_080--Hb_000320_440 Hb_001776_080--Hb_002149_040 Hb_000179_250 Hb_000179_250 Hb_001776_080--Hb_000179_250 Hb_011316_030 Hb_011316_030 Hb_001776_080--Hb_011316_030 Hb_002149_040--Hb_005016_030 Hb_002405_020 Hb_002405_020 Hb_002149_040--Hb_002405_020 Hb_002149_040--Hb_001016_060 Hb_006173_020 Hb_006173_020 Hb_002149_040--Hb_006173_020 Hb_060437_010 Hb_060437_010 Hb_003050_090--Hb_060437_010 Hb_001140_080 Hb_001140_080 Hb_003050_090--Hb_001140_080 Hb_003050_090--Hb_001034_020 Hb_001178_060 Hb_001178_060 Hb_003050_090--Hb_001178_060 Hb_001259_030 Hb_001259_030 Hb_003050_090--Hb_001259_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.9663 21.8031 1.07084 2.79624 72.2945 61.5061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.0447 23.2927 30.301 22.0535 0.414294

CAGE analysis