Hb_000926_270

Information

Type -
Description -
Location Contig926: 277779-281396
Sequence    

Annotation

kegg
ID rcu:RCOM_0753040
description hypothetical protein
nr
ID XP_012070889.1
description PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9STZ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0753040 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein l31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_270 0.0 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
2 Hb_002149_040 0.0860746877 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005016_030 0.0921886007 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
4 Hb_001776_080 0.0946622121 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
5 Hb_000953_140 0.0958050612 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
6 Hb_000692_260 0.0964511027 - - PREDICTED: uncharacterized protein LOC105635282 [Jatropha curcas]
7 Hb_001016_060 0.0977431347 - - conserved hypothetical protein [Ricinus communis]
8 Hb_160818_010 0.102976147 - - -
9 Hb_000088_180 0.1109560616 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
10 Hb_024399_010 0.1118307404 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
11 Hb_001178_060 0.1124513279 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
12 Hb_000483_370 0.1126951861 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000117_040 0.1135465924 - - 30S ribosomal protein S6A [Hevea brasiliensis]
14 Hb_003050_090 0.1135959026 - - lupus la ribonucleoprotein, putative [Ricinus communis]
15 Hb_011609_190 0.1142486216 - - 14-3-3 protein 2 [Hevea brasiliensis]
16 Hb_000491_080 0.1151281573 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
17 Hb_060437_010 0.1153725297 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
18 Hb_011930_010 0.1160643046 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
19 Hb_006173_020 0.11891867 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
20 Hb_003506_040 0.1192818588 - - hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_000926_270 Hb_000926_270 Hb_002149_040 Hb_002149_040 Hb_000926_270--Hb_002149_040 Hb_005016_030 Hb_005016_030 Hb_000926_270--Hb_005016_030 Hb_001776_080 Hb_001776_080 Hb_000926_270--Hb_001776_080 Hb_000953_140 Hb_000953_140 Hb_000926_270--Hb_000953_140 Hb_000692_260 Hb_000692_260 Hb_000926_270--Hb_000692_260 Hb_001016_060 Hb_001016_060 Hb_000926_270--Hb_001016_060 Hb_002149_040--Hb_005016_030 Hb_002405_020 Hb_002405_020 Hb_002149_040--Hb_002405_020 Hb_002149_040--Hb_001776_080 Hb_002149_040--Hb_001016_060 Hb_006173_020 Hb_006173_020 Hb_002149_040--Hb_006173_020 Hb_001178_060 Hb_001178_060 Hb_005016_030--Hb_001178_060 Hb_000322_170 Hb_000322_170 Hb_005016_030--Hb_000322_170 Hb_005016_030--Hb_006173_020 Hb_000320_440 Hb_000320_440 Hb_005016_030--Hb_000320_440 Hb_005016_030--Hb_001016_060 Hb_000176_140 Hb_000176_140 Hb_001776_080--Hb_000176_140 Hb_001776_080--Hb_000320_440 Hb_160818_010 Hb_160818_010 Hb_001776_080--Hb_160818_010 Hb_000179_250 Hb_000179_250 Hb_001776_080--Hb_000179_250 Hb_011316_030 Hb_011316_030 Hb_001776_080--Hb_011316_030 Hb_004931_040 Hb_004931_040 Hb_000953_140--Hb_004931_040 Hb_000953_140--Hb_160818_010 Hb_000953_140--Hb_001776_080 Hb_000953_140--Hb_002149_040 Hb_003050_090 Hb_003050_090 Hb_000953_140--Hb_003050_090 Hb_000692_260--Hb_001016_060 Hb_003605_070 Hb_003605_070 Hb_000692_260--Hb_003605_070 Hb_000284_200 Hb_000284_200 Hb_000692_260--Hb_000284_200 Hb_000300_540 Hb_000300_540 Hb_000692_260--Hb_000300_540 Hb_007786_010 Hb_007786_010 Hb_000692_260--Hb_007786_010 Hb_001016_060--Hb_006173_020 Hb_001016_060--Hb_003605_070 Hb_000363_340 Hb_000363_340 Hb_001016_060--Hb_000363_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.98441 1.06456 0.166301 0.120384 4.68738 3.29875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40957 1.73496 1.57923 0.642185 0.0974162

CAGE analysis