Hb_000363_340

Information

Type -
Description -
Location Contig363: 306354-309348
Sequence    

Annotation

kegg
ID pvu:PHAVU_006G048900g
description hypothetical protein
nr
ID XP_012070926.1
description PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
swissprot
ID Q94KK7
description Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1
trembl
ID A0A067KSP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00963 PE=4 SV=1
Gene Ontology
ID GO:0016020
description syntaxin-52-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37322: 306413-309283 , PASA_asmbl_37323: 306417-309152 , PASA_asmbl_37324: 308375-308697
cDNA
(Sanger)
(ID:Location)		 002_D11.ab1: 306417-309152 , 050_L03.ab1: 306423-309070

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_340 0.0 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
2 Hb_000392_280 0.0824152423 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
3 Hb_001016_060 0.0858331387 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012977_010 0.0878842946 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
5 Hb_005725_070 0.094382623 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001498_030 0.0951033839 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
7 Hb_000300_540 0.0964181054 - - PREDICTED: syntaxin-132 [Jatropha curcas]
8 Hb_002025_140 0.0966531604 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
9 Hb_007534_040 0.0966951892 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
10 Hb_004032_460 0.0996608654 - - -
11 Hb_000165_130 0.0997198826 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
12 Hb_007786_010 0.0998698678 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
13 Hb_000322_170 0.1040925022 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
14 Hb_001663_110 0.1042960562 - - RNA binding protein, putative [Ricinus communis]
15 Hb_000088_180 0.1049800443 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
16 Hb_009421_100 0.1054457048 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
17 Hb_000347_080 0.1059888702 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
18 Hb_000732_020 0.1070656943 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
19 Hb_000692_260 0.1071891115 - - PREDICTED: uncharacterized protein LOC105635282 [Jatropha curcas]
20 Hb_007111_040 0.107335569 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_340 Hb_000363_340 Hb_000392_280 Hb_000392_280 Hb_000363_340--Hb_000392_280 Hb_001016_060 Hb_001016_060 Hb_000363_340--Hb_001016_060 Hb_012977_010 Hb_012977_010 Hb_000363_340--Hb_012977_010 Hb_005725_070 Hb_005725_070 Hb_000363_340--Hb_005725_070 Hb_001498_030 Hb_001498_030 Hb_000363_340--Hb_001498_030 Hb_000300_540 Hb_000300_540 Hb_000363_340--Hb_000300_540 Hb_000173_210 Hb_000173_210 Hb_000392_280--Hb_000173_210 Hb_000392_280--Hb_000300_540 Hb_002025_140 Hb_002025_140 Hb_000392_280--Hb_002025_140 Hb_019871_020 Hb_019871_020 Hb_000392_280--Hb_019871_020 Hb_003581_110 Hb_003581_110 Hb_000392_280--Hb_003581_110 Hb_006173_020 Hb_006173_020 Hb_001016_060--Hb_006173_020 Hb_002149_040 Hb_002149_040 Hb_001016_060--Hb_002149_040 Hb_003605_070 Hb_003605_070 Hb_001016_060--Hb_003605_070 Hb_000692_260 Hb_000692_260 Hb_001016_060--Hb_000692_260 Hb_005016_030 Hb_005016_030 Hb_001016_060--Hb_005016_030 Hb_012977_010--Hb_005725_070 Hb_000347_080 Hb_000347_080 Hb_012977_010--Hb_000347_080 Hb_001969_040 Hb_001969_040 Hb_012977_010--Hb_001969_040 Hb_007786_010 Hb_007786_010 Hb_012977_010--Hb_007786_010 Hb_000165_130 Hb_000165_130 Hb_012977_010--Hb_000165_130 Hb_005725_070--Hb_001498_030 Hb_005725_070--Hb_002025_140 Hb_002818_040 Hb_002818_040 Hb_005725_070--Hb_002818_040 Hb_005314_010 Hb_005314_010 Hb_005725_070--Hb_005314_010 Hb_024399_010 Hb_024399_010 Hb_005725_070--Hb_024399_010 Hb_002133_030 Hb_002133_030 Hb_001498_030--Hb_002133_030 Hb_005144_040 Hb_005144_040 Hb_001498_030--Hb_005144_040 Hb_001498_030--Hb_001969_040 Hb_004724_360 Hb_004724_360 Hb_001498_030--Hb_004724_360 Hb_042083_070 Hb_042083_070 Hb_001498_030--Hb_042083_070 Hb_000300_540--Hb_007786_010 Hb_004032_460 Hb_004032_460 Hb_000300_540--Hb_004032_460 Hb_000062_230 Hb_000062_230 Hb_000300_540--Hb_000062_230 Hb_002172_030 Hb_002172_030 Hb_000300_540--Hb_002172_030 Hb_000173_370 Hb_000173_370 Hb_000300_540--Hb_000173_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
217.946 51.6691 36.0836 31.2211 212.691 201.466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.2189 63.432 56.8354 15.4592 8.00398

CAGE analysis