Hb_003050_090

Information

Type -
Description -
Location Contig3050: 103678-107989
Sequence    

Annotation

kegg
ID rcu:RCOM_0593750
description lupus la ribonucleoprotein, putative
nr
ID XP_002532535.1
description lupus la ribonucleoprotein, putative [Ricinus communis]
swissprot
ID Q94A38
description La-related protein 6A OS=Arabidopsis thaliana GN=LARP6A PE=2 SV=1
trembl
ID B9T2R6
description Lupus la ribonucleoprotein, putative OS=Ricinus communis GN=RCOM_0593750 PE=4 SV=1
Gene Ontology
ID GO:0005634
description la-related protein 6a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32125: 103677-108080 , PASA_asmbl_32126: 108521-112993
cDNA
(Sanger)
(ID:Location)		 025_B21.ab1: 104856-108079 , 039_F06.ab1: 105379-108080 , 044_D01.ab1: 104869-108079 , 053_B14.ab1: 105396-108079

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_090 0.0 - - lupus la ribonucleoprotein, putative [Ricinus communis]
2 Hb_060437_010 0.0728587787 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
3 Hb_001140_080 0.100237416 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
4 Hb_001034_020 0.1052851485 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
5 Hb_001178_060 0.1064451984 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
6 Hb_000953_140 0.1068238344 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
7 Hb_001259_030 0.108894024 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
8 Hb_160818_010 0.1133944166 - - -
9 Hb_000926_270 0.1135959026 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
10 Hb_005016_030 0.1141900367 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
11 Hb_003506_040 0.1142133398 - - hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]
12 Hb_004931_040 0.1147283231 - - splicing factor-related family protein [Populus trichocarpa]
13 Hb_000365_350 0.1154227417 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
14 Hb_001439_180 0.119706948 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
15 Hb_001776_080 0.122138573 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
16 Hb_000076_290 0.1239647588 - - translation factor sui1, putative [Ricinus communis]
17 Hb_000692_170 0.1251772421 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
18 Hb_000173_370 0.1270180748 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
19 Hb_000640_210 0.1271198156 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
20 Hb_000613_020 0.1273292081 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]

Gene co-expression network

sample Hb_003050_090 Hb_003050_090 Hb_060437_010 Hb_060437_010 Hb_003050_090--Hb_060437_010 Hb_001140_080 Hb_001140_080 Hb_003050_090--Hb_001140_080 Hb_001034_020 Hb_001034_020 Hb_003050_090--Hb_001034_020 Hb_001178_060 Hb_001178_060 Hb_003050_090--Hb_001178_060 Hb_000953_140 Hb_000953_140 Hb_003050_090--Hb_000953_140 Hb_001259_030 Hb_001259_030 Hb_003050_090--Hb_001259_030 Hb_060437_010--Hb_001034_020 Hb_012760_200 Hb_012760_200 Hb_060437_010--Hb_012760_200 Hb_060437_010--Hb_001178_060 Hb_000025_750 Hb_000025_750 Hb_060437_010--Hb_000025_750 Hb_000640_210 Hb_000640_210 Hb_060437_010--Hb_000640_210 Hb_000282_150 Hb_000282_150 Hb_001140_080--Hb_000282_150 Hb_012807_120 Hb_012807_120 Hb_001140_080--Hb_012807_120 Hb_000270_450 Hb_000270_450 Hb_001140_080--Hb_000270_450 Hb_006478_070 Hb_006478_070 Hb_001140_080--Hb_006478_070 Hb_003506_040 Hb_003506_040 Hb_001140_080--Hb_003506_040 Hb_005028_010 Hb_005028_010 Hb_001140_080--Hb_005028_010 Hb_000331_480 Hb_000331_480 Hb_001034_020--Hb_000331_480 Hb_001439_180 Hb_001439_180 Hb_001034_020--Hb_001439_180 Hb_001034_020--Hb_012760_200 Hb_004032_350 Hb_004032_350 Hb_001034_020--Hb_004032_350 Hb_002675_190 Hb_002675_190 Hb_001034_020--Hb_002675_190 Hb_005016_030 Hb_005016_030 Hb_001178_060--Hb_005016_030 Hb_000322_170 Hb_000322_170 Hb_001178_060--Hb_000322_170 Hb_001178_060--Hb_000640_210 Hb_000076_290 Hb_000076_290 Hb_001178_060--Hb_000076_290 Hb_002149_040 Hb_002149_040 Hb_001178_060--Hb_002149_040 Hb_004931_040 Hb_004931_040 Hb_000953_140--Hb_004931_040 Hb_000926_270 Hb_000926_270 Hb_000953_140--Hb_000926_270 Hb_160818_010 Hb_160818_010 Hb_000953_140--Hb_160818_010 Hb_001776_080 Hb_001776_080 Hb_000953_140--Hb_001776_080 Hb_000953_140--Hb_002149_040 Hb_001259_030--Hb_000640_210 Hb_001259_030--Hb_060437_010 Hb_001259_030--Hb_005028_010 Hb_000613_020 Hb_000613_020 Hb_001259_030--Hb_000613_020 Hb_001259_030--Hb_001140_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3783.71 815.493 59.9877 103.637 2662.06 2182.17
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1078.26 450.659 796.913 469.457 24.6555

CAGE analysis