Hb_000613_020

Information

Type -
Description -
Location Contig613: 12166-14758
Sequence    

Annotation

kegg
ID tcc:TCM_002453
description ARM repeat superfamily protein
nr
ID XP_012089621.1
description PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
swissprot
ID Q8GWV5
description U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2
trembl
ID A0A067JGL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01729 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51068: 12359-14577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_020 0.0 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
2 Hb_000025_750 0.0964523685 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
3 Hb_001259_030 0.1026436059 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
4 Hb_060437_010 0.1069196245 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
5 Hb_004032_460 0.1126953467 - - -
6 Hb_005028_010 0.115150317 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
7 Hb_001348_140 0.1175903908 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012807_120 0.1215207006 - - metal ion binding protein, putative [Ricinus communis]
9 Hb_001140_080 0.1215687799 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
10 Hb_001227_110 0.1230540159 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
11 Hb_002728_020 0.1233641668 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]
12 Hb_000849_150 0.1255135958 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
13 Hb_000692_170 0.1256496502 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
14 Hb_003050_090 0.1273292081 - - lupus la ribonucleoprotein, putative [Ricinus communis]
15 Hb_000365_350 0.1291585176 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
16 Hb_000640_210 0.1295246861 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
17 Hb_002897_040 0.1318342808 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
18 Hb_000173_370 0.1327014848 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
19 Hb_004254_040 0.1331285425 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
20 Hb_001408_090 0.1333330836 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]

Gene co-expression network

sample Hb_000613_020 Hb_000613_020 Hb_000025_750 Hb_000025_750 Hb_000613_020--Hb_000025_750 Hb_001259_030 Hb_001259_030 Hb_000613_020--Hb_001259_030 Hb_060437_010 Hb_060437_010 Hb_000613_020--Hb_060437_010 Hb_004032_460 Hb_004032_460 Hb_000613_020--Hb_004032_460 Hb_005028_010 Hb_005028_010 Hb_000613_020--Hb_005028_010 Hb_001348_140 Hb_001348_140 Hb_000613_020--Hb_001348_140 Hb_001227_110 Hb_001227_110 Hb_000025_750--Hb_001227_110 Hb_000849_150 Hb_000849_150 Hb_000025_750--Hb_000849_150 Hb_001408_090 Hb_001408_090 Hb_000025_750--Hb_001408_090 Hb_000692_170 Hb_000692_170 Hb_000025_750--Hb_000692_170 Hb_000093_130 Hb_000093_130 Hb_000025_750--Hb_000093_130 Hb_002025_140 Hb_002025_140 Hb_000025_750--Hb_002025_140 Hb_000640_210 Hb_000640_210 Hb_001259_030--Hb_000640_210 Hb_001259_030--Hb_060437_010 Hb_001259_030--Hb_005028_010 Hb_001140_080 Hb_001140_080 Hb_001259_030--Hb_001140_080 Hb_003050_090 Hb_003050_090 Hb_001259_030--Hb_003050_090 Hb_001034_020 Hb_001034_020 Hb_060437_010--Hb_001034_020 Hb_060437_010--Hb_003050_090 Hb_012760_200 Hb_012760_200 Hb_060437_010--Hb_012760_200 Hb_001178_060 Hb_001178_060 Hb_060437_010--Hb_001178_060 Hb_060437_010--Hb_000025_750 Hb_060437_010--Hb_000640_210 Hb_000088_180 Hb_000088_180 Hb_004032_460--Hb_000088_180 Hb_000173_370 Hb_000173_370 Hb_004032_460--Hb_000173_370 Hb_000300_540 Hb_000300_540 Hb_004032_460--Hb_000300_540 Hb_000365_350 Hb_000365_350 Hb_004032_460--Hb_000365_350 Hb_004032_460--Hb_000849_150 Hb_000363_340 Hb_000363_340 Hb_004032_460--Hb_000363_340 Hb_005028_010--Hb_012760_200 Hb_000212_280 Hb_000212_280 Hb_005028_010--Hb_000212_280 Hb_005028_010--Hb_000640_210 Hb_000573_040 Hb_000573_040 Hb_005028_010--Hb_000573_040 Hb_025048_040 Hb_025048_040 Hb_005028_010--Hb_025048_040 Hb_005028_010--Hb_001140_080 Hb_001348_140--Hb_000640_210 Hb_000500_290 Hb_000500_290 Hb_001348_140--Hb_000500_290 Hb_001348_140--Hb_005028_010 Hb_000264_060 Hb_000264_060 Hb_001348_140--Hb_000264_060 Hb_002728_020 Hb_002728_020 Hb_001348_140--Hb_002728_020 Hb_009615_110 Hb_009615_110 Hb_001348_140--Hb_009615_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
687.623 120.523 59.6972 17.4444 422.625 413.702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
196.573 52.7348 62.1326 41.4834 12.8052

CAGE analysis