Hb_002728_020

Information

Type transcription factor
Description TF Family: GNAT
Location Contig2728: 31449-33996
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09340g
description hypothetical protein
nr
ID XP_012091094.1
description PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]
swissprot
ID Q1XDU5
description Uncharacterized N-acetyltransferase ycf52 OS=Pyropia yezoensis GN=ycf52 PE=3 SV=1
trembl
ID A0A067JQ18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03285 PE=4 SV=1
Gene Ontology
ID GO:0008080
description acetyltransferase nsi

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28494: 31629-32057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002728_020 0.0 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]
2 Hb_000173_370 0.0947344587 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
3 Hb_001348_140 0.0953287821 - - conserved hypothetical protein [Ricinus communis]
4 Hb_089140_080 0.1083174732 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
5 Hb_000692_170 0.1120133631 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
6 Hb_000188_190 0.1123864147 - - -
7 Hb_002025_140 0.1147939842 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
8 Hb_004032_460 0.1152276372 - - -
9 Hb_012807_120 0.1162752901 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_000320_440 0.1226811151 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
11 Hb_001140_080 0.1227347846 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
12 Hb_009615_110 0.1228964829 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
13 Hb_000015_010 0.1230082467 - - -
14 Hb_000613_020 0.1233641668 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
15 Hb_060437_010 0.1235944402 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
16 Hb_005015_010 0.1250716291 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
17 Hb_000025_750 0.1262252386 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
18 Hb_000500_290 0.1263062173 - - bromodomain-containing protein, putative [Ricinus communis]
19 Hb_001776_080 0.1276767447 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
20 Hb_160818_010 0.1277694746 - - -

Gene co-expression network

sample Hb_002728_020 Hb_002728_020 Hb_000173_370 Hb_000173_370 Hb_002728_020--Hb_000173_370 Hb_001348_140 Hb_001348_140 Hb_002728_020--Hb_001348_140 Hb_089140_080 Hb_089140_080 Hb_002728_020--Hb_089140_080 Hb_000692_170 Hb_000692_170 Hb_002728_020--Hb_000692_170 Hb_000188_190 Hb_000188_190 Hb_002728_020--Hb_000188_190 Hb_002025_140 Hb_002025_140 Hb_002728_020--Hb_002025_140 Hb_000173_370--Hb_002025_140 Hb_004032_460 Hb_004032_460 Hb_000173_370--Hb_004032_460 Hb_000088_180 Hb_000088_180 Hb_000173_370--Hb_000088_180 Hb_004531_090 Hb_004531_090 Hb_000173_370--Hb_004531_090 Hb_000573_040 Hb_000573_040 Hb_000173_370--Hb_000573_040 Hb_000173_210 Hb_000173_210 Hb_000173_370--Hb_000173_210 Hb_000640_210 Hb_000640_210 Hb_001348_140--Hb_000640_210 Hb_000500_290 Hb_000500_290 Hb_001348_140--Hb_000500_290 Hb_005028_010 Hb_005028_010 Hb_001348_140--Hb_005028_010 Hb_000264_060 Hb_000264_060 Hb_001348_140--Hb_000264_060 Hb_009615_110 Hb_009615_110 Hb_001348_140--Hb_009615_110 Hb_089140_080--Hb_000500_290 Hb_089140_080--Hb_001348_140 Hb_011537_040 Hb_011537_040 Hb_089140_080--Hb_011537_040 Hb_089140_080--Hb_000188_190 Hb_003913_100 Hb_003913_100 Hb_089140_080--Hb_003913_100 Hb_000025_750 Hb_000025_750 Hb_000692_170--Hb_000025_750 Hb_060437_010 Hb_060437_010 Hb_000692_170--Hb_060437_010 Hb_005725_070 Hb_005725_070 Hb_000692_170--Hb_005725_070 Hb_001227_110 Hb_001227_110 Hb_000692_170--Hb_001227_110 Hb_000093_130 Hb_000093_130 Hb_000692_170--Hb_000093_130 Hb_000015_010 Hb_000015_010 Hb_000188_190--Hb_000015_010 Hb_005015_010 Hb_005015_010 Hb_000188_190--Hb_005015_010 Hb_004374_010 Hb_004374_010 Hb_000188_190--Hb_004374_010 Hb_005714_040 Hb_005714_040 Hb_000188_190--Hb_005714_040 Hb_000188_190--Hb_004032_460 Hb_002025_140--Hb_000573_040 Hb_002025_140--Hb_004531_090 Hb_000165_130 Hb_000165_130 Hb_002025_140--Hb_000165_130 Hb_003216_110 Hb_003216_110 Hb_002025_140--Hb_003216_110 Hb_004032_350 Hb_004032_350 Hb_002025_140--Hb_004032_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
105.005 27.9566 8.55346 2.75255 118.517 68.5565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.9718 18.3452 16.3637 10.3757 3.73273

CAGE analysis