Hb_089140_080

Information

Type transcription factor
Description TF Family: GNAT
Location Contig89140: 53612-56687
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14440g
description GCN5-related N-acetyltransferase family protein
nr
ID XP_012077046.1
description PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07483 PE=4 SV=1
Gene Ontology
ID GO:0008080
description gcn5-related n-acetyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61670: 53698-56639 , PASA_asmbl_61671: 53654-56639 , PASA_asmbl_61672: 54010-55967 , PASA_asmbl_61673: 53735-56008
cDNA
(Sanger)
(ID:Location)		 027_B09.ab1: 53652-55966

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089140_080 0.0 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
2 Hb_002728_020 0.1083174732 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]
3 Hb_000500_290 0.1488625116 - - bromodomain-containing protein, putative [Ricinus communis]
4 Hb_001348_140 0.1521173352 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011537_040 0.1579123619 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
6 Hb_000188_190 0.1625537318 - - -
7 Hb_003913_100 0.1634928604 - - copper amine oxidase, putative [Ricinus communis]
8 Hb_012807_120 0.1637804612 - - metal ion binding protein, putative [Ricinus communis]
9 Hb_005015_010 0.1664995969 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
10 Hb_006452_190 0.1668585615 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
11 Hb_000173_370 0.1708663967 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
12 Hb_000613_020 0.1720005735 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
13 Hb_000525_040 0.1760580764 - - -
14 Hb_005271_070 0.1774583111 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
15 Hb_000641_030 0.1783297773 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
16 Hb_001140_080 0.1785172089 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
17 Hb_000138_010 0.1800496067 - - hypothetical protein RCOM_0504460 [Ricinus communis]
18 Hb_005714_040 0.1805620506 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000566_140 0.181219216 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
20 Hb_001956_120 0.1813412839 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_089140_080 Hb_089140_080 Hb_002728_020 Hb_002728_020 Hb_089140_080--Hb_002728_020 Hb_000500_290 Hb_000500_290 Hb_089140_080--Hb_000500_290 Hb_001348_140 Hb_001348_140 Hb_089140_080--Hb_001348_140 Hb_011537_040 Hb_011537_040 Hb_089140_080--Hb_011537_040 Hb_000188_190 Hb_000188_190 Hb_089140_080--Hb_000188_190 Hb_003913_100 Hb_003913_100 Hb_089140_080--Hb_003913_100 Hb_000173_370 Hb_000173_370 Hb_002728_020--Hb_000173_370 Hb_002728_020--Hb_001348_140 Hb_000692_170 Hb_000692_170 Hb_002728_020--Hb_000692_170 Hb_002728_020--Hb_000188_190 Hb_002025_140 Hb_002025_140 Hb_002728_020--Hb_002025_140 Hb_000282_150 Hb_000282_150 Hb_000500_290--Hb_000282_150 Hb_005271_070 Hb_005271_070 Hb_000500_290--Hb_005271_070 Hb_000500_290--Hb_001348_140 Hb_004232_010 Hb_004232_010 Hb_000500_290--Hb_004232_010 Hb_009615_110 Hb_009615_110 Hb_000500_290--Hb_009615_110 Hb_000500_290--Hb_011537_040 Hb_000640_210 Hb_000640_210 Hb_001348_140--Hb_000640_210 Hb_005028_010 Hb_005028_010 Hb_001348_140--Hb_005028_010 Hb_000264_060 Hb_000264_060 Hb_001348_140--Hb_000264_060 Hb_001348_140--Hb_009615_110 Hb_011537_040--Hb_005271_070 Hb_000258_410 Hb_000258_410 Hb_011537_040--Hb_000258_410 Hb_001956_120 Hb_001956_120 Hb_011537_040--Hb_001956_120 Hb_004374_010 Hb_004374_010 Hb_011537_040--Hb_004374_010 Hb_011537_040--Hb_000282_150 Hb_002851_060 Hb_002851_060 Hb_011537_040--Hb_002851_060 Hb_000015_010 Hb_000015_010 Hb_000188_190--Hb_000015_010 Hb_005015_010 Hb_005015_010 Hb_000188_190--Hb_005015_010 Hb_000188_190--Hb_004374_010 Hb_005714_040 Hb_005714_040 Hb_000188_190--Hb_005714_040 Hb_004032_460 Hb_004032_460 Hb_000188_190--Hb_004032_460 Hb_002835_190 Hb_002835_190 Hb_003913_100--Hb_002835_190 Hb_001635_220 Hb_001635_220 Hb_003913_100--Hb_001635_220 Hb_000320_440 Hb_000320_440 Hb_003913_100--Hb_000320_440 Hb_001776_080 Hb_001776_080 Hb_003913_100--Hb_001776_080 Hb_012654_020 Hb_012654_020 Hb_003913_100--Hb_012654_020 Hb_000172_530 Hb_000172_530 Hb_003913_100--Hb_000172_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
429.323 71.4111 40.3843 13.2899 477.215 224.902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
351.184 46.133 49.484 24.2578 11.3874

CAGE analysis