Hb_010407_070

Information

Type -
Description -
Location Contig10407: 75589-76203
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16750g
description POPTRDRAFT_420721; hypothetical protein
nr
ID XP_002311674.2
description hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
swissprot
ID Q9LMK2
description Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 SV=1
trembl
ID A9PIK8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s16750g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01509: 75470-76055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010407_070 0.0 - - hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
2 Hb_026698_010 0.0878833662 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
3 Hb_004225_180 0.1150927821 - - bel1 homeotic protein, putative [Ricinus communis]
4 Hb_000050_100 0.144914747 - - PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
5 Hb_000116_230 0.1450201299 - - -
6 Hb_000599_140 0.1465873608 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Populus euphratica]
7 Hb_007849_040 0.1496228293 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
8 Hb_003978_010 0.1560937957 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_006189_010 0.1573528667 - - -
10 Hb_180333_010 0.1618749518 - - -
11 Hb_017987_090 0.1625018172 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
12 Hb_011472_040 0.1668713885 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
13 Hb_004607_150 0.1739845713 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
14 Hb_017987_070 0.1787307154 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
15 Hb_008959_030 0.1796354749 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
16 Hb_084934_010 0.1798002801 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
17 Hb_000173_480 0.1807978946 - - PREDICTED: calcium-binding protein 39 [Jatropha curcas]
18 Hb_000457_170 0.1827508757 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
19 Hb_000381_080 0.1882061455 transcription factor TF Family: SNF2 PREDICTED: DNA repair protein RAD16 [Jatropha curcas]
20 Hb_000050_090 0.1899560735 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_010407_070 Hb_010407_070 Hb_026698_010 Hb_026698_010 Hb_010407_070--Hb_026698_010 Hb_004225_180 Hb_004225_180 Hb_010407_070--Hb_004225_180 Hb_000050_100 Hb_000050_100 Hb_010407_070--Hb_000050_100 Hb_000116_230 Hb_000116_230 Hb_010407_070--Hb_000116_230 Hb_000599_140 Hb_000599_140 Hb_010407_070--Hb_000599_140 Hb_007849_040 Hb_007849_040 Hb_010407_070--Hb_007849_040 Hb_026698_010--Hb_004225_180 Hb_026698_010--Hb_000599_140 Hb_017987_070 Hb_017987_070 Hb_026698_010--Hb_017987_070 Hb_000457_170 Hb_000457_170 Hb_026698_010--Hb_000457_170 Hb_004607_150 Hb_004607_150 Hb_026698_010--Hb_004607_150 Hb_006189_010 Hb_006189_010 Hb_004225_180--Hb_006189_010 Hb_011472_040 Hb_011472_040 Hb_004225_180--Hb_011472_040 Hb_004225_180--Hb_007849_040 Hb_003978_010 Hb_003978_010 Hb_004225_180--Hb_003978_010 Hb_017987_090 Hb_017987_090 Hb_000050_100--Hb_017987_090 Hb_000050_090 Hb_000050_090 Hb_000050_100--Hb_000050_090 Hb_000703_060 Hb_000703_060 Hb_000050_100--Hb_000703_060 Hb_000050_100--Hb_026698_010 Hb_000139_240 Hb_000139_240 Hb_000050_100--Hb_000139_240 Hb_000116_230--Hb_000599_140 Hb_000237_080 Hb_000237_080 Hb_000116_230--Hb_000237_080 Hb_001655_070 Hb_001655_070 Hb_000116_230--Hb_001655_070 Hb_002798_060 Hb_002798_060 Hb_000116_230--Hb_002798_060 Hb_008959_030 Hb_008959_030 Hb_000116_230--Hb_008959_030 Hb_000599_140--Hb_002798_060 Hb_000599_140--Hb_008959_030 Hb_005306_130 Hb_005306_130 Hb_000599_140--Hb_005306_130 Hb_007849_040--Hb_017987_090 Hb_000567_200 Hb_000567_200 Hb_007849_040--Hb_000567_200 Hb_001186_060 Hb_001186_060 Hb_007849_040--Hb_001186_060 Hb_007849_040--Hb_003978_010 Hb_001195_100 Hb_001195_100 Hb_007849_040--Hb_001195_100 Hb_000033_050 Hb_000033_050 Hb_007849_040--Hb_000033_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.0292 50.5945 0 1.42153 28.6357 40.8468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.9247 30.8358 20.9513 17.4216 0

CAGE analysis