Hb_000371_110

Information

Type -
Description -
Location Contig371: 258075-265261
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000371_110 0.0 - - -
2 Hb_001433_170 0.0902107593 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
3 Hb_000117_040 0.0938646996 - - 30S ribosomal protein S6A [Hevea brasiliensis]
4 Hb_001186_060 0.0957093489 - - -
5 Hb_000163_290 0.1039302545 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
6 Hb_006499_010 0.1046039542 - - -
7 Hb_000138_040 0.1089129687 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
8 Hb_000176_140 0.1099737991 - - PREDICTED: bystin [Jatropha curcas]
9 Hb_001514_200 0.1113186553 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
10 Hb_004586_190 0.1119977569 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
11 Hb_000784_090 0.1132217364 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
12 Hb_000771_140 0.1133098511 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
13 Hb_000179_250 0.113914993 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
14 Hb_001930_070 0.1139940577 - - -
15 Hb_003638_030 0.1150384257 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
16 Hb_127979_010 0.1191477829 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
17 Hb_000481_010 0.1194081091 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
18 Hb_001804_060 0.1198149996 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
19 Hb_003747_240 0.1205533591 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
20 Hb_002249_140 0.120983196 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]

Gene co-expression network

sample Hb_000371_110 Hb_000371_110 Hb_001433_170 Hb_001433_170 Hb_000371_110--Hb_001433_170 Hb_000117_040 Hb_000117_040 Hb_000371_110--Hb_000117_040 Hb_001186_060 Hb_001186_060 Hb_000371_110--Hb_001186_060 Hb_000163_290 Hb_000163_290 Hb_000371_110--Hb_000163_290 Hb_006499_010 Hb_006499_010 Hb_000371_110--Hb_006499_010 Hb_000138_040 Hb_000138_040 Hb_000371_110--Hb_000138_040 Hb_000057_060 Hb_000057_060 Hb_001433_170--Hb_000057_060 Hb_127979_010 Hb_127979_010 Hb_001433_170--Hb_127979_010 Hb_000179_250 Hb_000179_250 Hb_001433_170--Hb_000179_250 Hb_000176_140 Hb_000176_140 Hb_001433_170--Hb_000176_140 Hb_026048_090 Hb_026048_090 Hb_001433_170--Hb_026048_090 Hb_011609_190 Hb_011609_190 Hb_001433_170--Hb_011609_190 Hb_000117_040--Hb_011609_190 Hb_000117_040--Hb_000163_290 Hb_000117_040--Hb_026048_090 Hb_004813_010 Hb_004813_010 Hb_000117_040--Hb_004813_010 Hb_000117_040--Hb_000179_250 Hb_001930_070 Hb_001930_070 Hb_001186_060--Hb_001930_070 Hb_001186_060--Hb_006499_010 Hb_001186_060--Hb_000163_290 Hb_006189_010 Hb_006189_010 Hb_001186_060--Hb_006189_010 Hb_000033_050 Hb_000033_050 Hb_001186_060--Hb_000033_050 Hb_000163_290--Hb_006499_010 Hb_001518_020 Hb_001518_020 Hb_000163_290--Hb_001518_020 Hb_003747_240 Hb_003747_240 Hb_000163_290--Hb_003747_240 Hb_006499_010--Hb_001930_070 Hb_007245_090 Hb_007245_090 Hb_006499_010--Hb_007245_090 Hb_006499_010--Hb_000033_050 Hb_006499_010--Hb_003747_240 Hb_001817_180 Hb_001817_180 Hb_000138_040--Hb_001817_180 Hb_000358_080 Hb_000358_080 Hb_000138_040--Hb_000358_080 Hb_000134_350 Hb_000134_350 Hb_000138_040--Hb_000134_350 Hb_009382_020 Hb_009382_020 Hb_000138_040--Hb_009382_020 Hb_029281_010 Hb_029281_010 Hb_000138_040--Hb_029281_010 Hb_001274_020 Hb_001274_020 Hb_000138_040--Hb_001274_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7593 3.3671 0.346932 0.0819992 10.4177 9.44692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.0576 6.06945 7.02879 1.9181 0.641085

CAGE analysis