Hb_001274_020

Information

Type desease resistance
Description Gene Name: ABC_tran
Location Contig1274: 18888-23708
Sequence    

Annotation

kegg
ID rcu:RCOM_0473000
description ATP-dependent transporter, putative (EC:3.6.3.41)
nr
ID AFO64340.1
description ABC transporter GCN1 [Hevea brasiliensis]
swissprot
ID Q9FJH6
description ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1
trembl
ID I7CX81
description ABC transporter GCN1 OS=Hevea brasiliensis GN=GCN1 PE=2 SV=1
Gene Ontology
ID GO:0005524
description abc transporter f family member 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08357: 18876-23710 , PASA_asmbl_08359: 20560-20733 , PASA_asmbl_08360: 21805-21925
cDNA
(Sanger)
(ID:Location)		 001_O03.ab1: 18889-19420 , 013_P03.ab1: 20993-23710 , 027_L08.ab1: 21135-23710 , 047_I24.ab1: 18889-19420 , 051_J05.ab1: 22087-23706

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001274_020 0.0 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
2 Hb_015401_020 0.0898504826 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_000500_040 0.0912861939 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000138_040 0.09312788 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
5 Hb_001516_100 0.0937941455 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000836_360 0.0975959707 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
7 Hb_000808_180 0.0985226262 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
8 Hb_000953_010 0.1037627398 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
9 Hb_001141_330 0.1058210289 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
10 Hb_005324_010 0.1066380449 - - Chaperone protein dnaJ, putative [Ricinus communis]
11 Hb_001817_180 0.1066788038 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
12 Hb_002270_010 0.108691756 - - Chaperone protein dnaJ, putative [Ricinus communis]
13 Hb_000358_080 0.1093332015 - - Ribonuclease 3 [Gossypium arboreum]
14 Hb_004129_130 0.1096027694 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_029281_010 0.1097865951 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
16 Hb_004734_060 0.1106977152 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
17 Hb_001584_170 0.1120070156 - - neutral/alkaline invertase [Manihot esculenta]
18 Hb_000997_090 0.1125584217 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
19 Hb_000490_030 0.1130435111 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
20 Hb_002026_110 0.1135924024 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001274_020 Hb_001274_020 Hb_015401_020 Hb_015401_020 Hb_001274_020--Hb_015401_020 Hb_000500_040 Hb_000500_040 Hb_001274_020--Hb_000500_040 Hb_000138_040 Hb_000138_040 Hb_001274_020--Hb_000138_040 Hb_001516_100 Hb_001516_100 Hb_001274_020--Hb_001516_100 Hb_000836_360 Hb_000836_360 Hb_001274_020--Hb_000836_360 Hb_000808_180 Hb_000808_180 Hb_001274_020--Hb_000808_180 Hb_000076_290 Hb_000076_290 Hb_015401_020--Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_015401_020--Hb_000174_200 Hb_001439_180 Hb_001439_180 Hb_015401_020--Hb_001439_180 Hb_005314_010 Hb_005314_010 Hb_015401_020--Hb_005314_010 Hb_002270_010 Hb_002270_010 Hb_015401_020--Hb_002270_010 Hb_000175_450 Hb_000175_450 Hb_000500_040--Hb_000175_450 Hb_000056_100 Hb_000056_100 Hb_000500_040--Hb_000056_100 Hb_002026_100 Hb_002026_100 Hb_000500_040--Hb_002026_100 Hb_000953_010 Hb_000953_010 Hb_000500_040--Hb_000953_010 Hb_000500_040--Hb_000836_360 Hb_001817_180 Hb_001817_180 Hb_000138_040--Hb_001817_180 Hb_000358_080 Hb_000358_080 Hb_000138_040--Hb_000358_080 Hb_000134_350 Hb_000134_350 Hb_000138_040--Hb_000134_350 Hb_009382_020 Hb_009382_020 Hb_000138_040--Hb_009382_020 Hb_029281_010 Hb_029281_010 Hb_000138_040--Hb_029281_010 Hb_004734_060 Hb_004734_060 Hb_001516_100--Hb_004734_060 Hb_001516_100--Hb_000953_010 Hb_001516_100--Hb_000836_360 Hb_001516_100--Hb_000808_180 Hb_000977_070 Hb_000977_070 Hb_001516_100--Hb_000977_070 Hb_033152_080 Hb_033152_080 Hb_001516_100--Hb_033152_080 Hb_000836_360--Hb_000953_010 Hb_002307_100 Hb_002307_100 Hb_000836_360--Hb_002307_100 Hb_002477_160 Hb_002477_160 Hb_000836_360--Hb_002477_160 Hb_000184_130 Hb_000184_130 Hb_000836_360--Hb_000184_130 Hb_005324_010 Hb_005324_010 Hb_000836_360--Hb_005324_010 Hb_000808_180--Hb_033152_080 Hb_001366_040 Hb_001366_040 Hb_000808_180--Hb_001366_040 Hb_002798_040 Hb_002798_040 Hb_000808_180--Hb_002798_040 Hb_000808_180--Hb_004734_060 Hb_002960_060 Hb_002960_060 Hb_000808_180--Hb_002960_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1348.3 805.551 88.1917 140.324 811.986 1029.15
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
565.616 527.589 851.514 348.916 99.5867

CAGE analysis