Hb_001976_050

Information

Type -
Description -
Location Contig1976: 35631-35921
Sequence    

Annotation

kegg
ID rcu:RCOM_0270660
description hypothetical protein
nr
ID XP_012081673.1
description PREDICTED: protein SKIP34 [Jatropha curcas]
swissprot
ID Q8GWU7
description Protein SKIP34 OS=Arabidopsis thaliana GN=SKIP34 PE=1 SV=1
trembl
ID A0A067K0P3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18706 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19854: 35536-36095
cDNA
(Sanger)
(ID:Location)		 022_B14.ab1: 35547-36090 , 036_C16.ab1: 35536-36095 , 050_I16.ab1: 35536-36095 , 050_L13.ab1: 35536-36095

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001976_050 0.0 - - PREDICTED: protein SKIP34 [Jatropha curcas]
2 Hb_155375_010 0.0953602577 - - hypothetical protein JCGZ_23388 [Jatropha curcas]
3 Hb_000032_540 0.1172131242 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
4 Hb_143947_010 0.1187246576 - - PREDICTED: deSI-like protein At4g17486 isoform X2 [Pyrus x bretschneideri]
5 Hb_000510_090 0.1215276216 - - 40S ribosomal protein S15 [Morus notabilis]
6 Hb_000705_220 0.1271129535 - - unnamed protein product [Vitis vinifera]
7 Hb_002259_030 0.1341829583 - - conserved hypothetical protein [Ricinus communis]
8 Hb_073339_010 0.1349238801 - - hypothetical protein 30 [Hevea brasiliensis]
9 Hb_000620_080 0.1350160263 - - hypothetical protein F775_32679 [Aegilops tauschii]
10 Hb_000035_130 0.1376588131 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
11 Hb_120221_010 0.1384088883 - - -
12 Hb_004117_180 0.1385674936 - - -
13 Hb_153054_010 0.1412592304 - - PREDICTED: metal tolerance protein 11-like [Populus euphratica]
14 Hb_000347_340 0.142308425 - - ring finger, putative [Ricinus communis]
15 Hb_001818_080 0.1450396965 - - PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]
16 Hb_034585_030 0.1469170474 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
17 Hb_006455_110 0.1507829113 - - bromodomain-containing protein, putative [Ricinus communis]
18 Hb_011016_090 0.1517462685 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
19 Hb_005965_010 0.1525137119 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
20 Hb_000995_050 0.1529365261 - - 40S ribosomal protein S17C [Hevea brasiliensis]

Gene co-expression network

sample Hb_001976_050 Hb_001976_050 Hb_155375_010 Hb_155375_010 Hb_001976_050--Hb_155375_010 Hb_000032_540 Hb_000032_540 Hb_001976_050--Hb_000032_540 Hb_143947_010 Hb_143947_010 Hb_001976_050--Hb_143947_010 Hb_000510_090 Hb_000510_090 Hb_001976_050--Hb_000510_090 Hb_000705_220 Hb_000705_220 Hb_001976_050--Hb_000705_220 Hb_002259_030 Hb_002259_030 Hb_001976_050--Hb_002259_030 Hb_155375_010--Hb_000510_090 Hb_002217_310 Hb_002217_310 Hb_155375_010--Hb_002217_310 Hb_000243_280 Hb_000243_280 Hb_155375_010--Hb_000243_280 Hb_000749_150 Hb_000749_150 Hb_155375_010--Hb_000749_150 Hb_000620_080 Hb_000620_080 Hb_155375_010--Hb_000620_080 Hb_000032_540--Hb_002259_030 Hb_000189_530 Hb_000189_530 Hb_000032_540--Hb_000189_530 Hb_011161_040 Hb_011161_040 Hb_000032_540--Hb_011161_040 Hb_000175_400 Hb_000175_400 Hb_000032_540--Hb_000175_400 Hb_011016_090 Hb_011016_090 Hb_000032_540--Hb_011016_090 Hb_000144_090 Hb_000144_090 Hb_000032_540--Hb_000144_090 Hb_001818_080 Hb_001818_080 Hb_143947_010--Hb_001818_080 Hb_000703_090 Hb_000703_090 Hb_143947_010--Hb_000703_090 Hb_003494_240 Hb_003494_240 Hb_143947_010--Hb_003494_240 Hb_010298_010 Hb_010298_010 Hb_143947_010--Hb_010298_010 Hb_000035_130 Hb_000035_130 Hb_143947_010--Hb_000035_130 Hb_143813_010 Hb_143813_010 Hb_000510_090--Hb_143813_010 Hb_004724_100 Hb_004724_100 Hb_000510_090--Hb_004724_100 Hb_034585_030 Hb_034585_030 Hb_000510_090--Hb_034585_030 Hb_003777_270 Hb_003777_270 Hb_000510_090--Hb_003777_270 Hb_141131_010 Hb_141131_010 Hb_000510_090--Hb_141131_010 Hb_020902_010 Hb_020902_010 Hb_000705_220--Hb_020902_010 Hb_005410_040 Hb_005410_040 Hb_000705_220--Hb_005410_040 Hb_000705_220--Hb_155375_010 Hb_005735_030 Hb_005735_030 Hb_000705_220--Hb_005735_030 Hb_000705_220--Hb_000032_540 Hb_002259_030--Hb_000175_400 Hb_002259_030--Hb_011016_090 Hb_004453_150 Hb_004453_150 Hb_002259_030--Hb_004453_150 Hb_000156_130 Hb_000156_130 Hb_002259_030--Hb_000156_130 Hb_001454_140 Hb_001454_140 Hb_002259_030--Hb_001454_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
154.515 70.035 12.6105 85.8065 90.1207 400.468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
124.252 179.628 97.742 41.8777 6.77232

CAGE analysis