Hb_005410_040

Information

Type -
Description -
Location Contig5410: 28730-37752
Sequence    

Annotation

kegg
ID cit:102620903
description probable ADP,ATP carrier protein At5g56450-like
nr
ID XP_012077267.1
description PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
swissprot
ID Q9FM86
description Probable ADP,ATP carrier protein At5g56450 OS=Arabidopsis thaliana GN=At5g56450 PE=2 SV=1
trembl
ID A0A067KCY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07657 PE=3 SV=1
Gene Ontology
ID GO:0005743
description probable carrier protein at5g56450

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47871: 35597-37768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005410_040 0.0 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
2 Hb_000705_220 0.1339087276 - - unnamed protein product [Vitis vinifera]
3 Hb_005215_080 0.1424530322 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
4 Hb_020902_010 0.1459472823 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
5 Hb_155375_010 0.146885818 - - hypothetical protein JCGZ_23388 [Jatropha curcas]
6 Hb_000510_090 0.1476808912 - - 40S ribosomal protein S15 [Morus notabilis]
7 Hb_000442_160 0.1517433365 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
8 Hb_000041_220 0.1529431945 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
9 Hb_034585_030 0.1545173125 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
10 Hb_003777_270 0.1554297667 - - 60S ribosomal protein L3B [Hevea brasiliensis]
11 Hb_039253_010 0.155677258 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
12 Hb_000307_200 0.1606144145 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
13 Hb_002023_020 0.1617848459 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
14 Hb_001952_070 0.1627571003 - - 40S ribosomal protein S6B [Hevea brasiliensis]
15 Hb_000749_150 0.164244376 - - -
16 Hb_000045_070 0.1655866018 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000103_140 0.1660513855 - - ribosomal protein S3a [Populus trichocarpa]
18 Hb_010608_010 0.1667984088 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
19 Hb_009543_030 0.1675541409 - - prefoldin subunit 1 [Jatropha curcas]
20 Hb_004735_010 0.1675644236 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]

Gene co-expression network

sample Hb_005410_040 Hb_005410_040 Hb_000705_220 Hb_000705_220 Hb_005410_040--Hb_000705_220 Hb_005215_080 Hb_005215_080 Hb_005410_040--Hb_005215_080 Hb_020902_010 Hb_020902_010 Hb_005410_040--Hb_020902_010 Hb_155375_010 Hb_155375_010 Hb_005410_040--Hb_155375_010 Hb_000510_090 Hb_000510_090 Hb_005410_040--Hb_000510_090 Hb_000442_160 Hb_000442_160 Hb_005410_040--Hb_000442_160 Hb_001976_050 Hb_001976_050 Hb_000705_220--Hb_001976_050 Hb_000705_220--Hb_020902_010 Hb_000705_220--Hb_155375_010 Hb_005735_030 Hb_005735_030 Hb_000705_220--Hb_005735_030 Hb_000032_540 Hb_000032_540 Hb_000705_220--Hb_000032_540 Hb_002014_080 Hb_002014_080 Hb_005215_080--Hb_002014_080 Hb_000462_150 Hb_000462_150 Hb_005215_080--Hb_000462_150 Hb_009118_010 Hb_009118_010 Hb_005215_080--Hb_009118_010 Hb_123475_010 Hb_123475_010 Hb_005215_080--Hb_123475_010 Hb_000370_030 Hb_000370_030 Hb_005215_080--Hb_000370_030 Hb_010866_040 Hb_010866_040 Hb_005215_080--Hb_010866_040 Hb_036034_010 Hb_036034_010 Hb_020902_010--Hb_036034_010 Hb_000878_130 Hb_000878_130 Hb_020902_010--Hb_000878_130 Hb_000307_200 Hb_000307_200 Hb_020902_010--Hb_000307_200 Hb_012286_050 Hb_012286_050 Hb_020902_010--Hb_012286_050 Hb_014568_030 Hb_014568_030 Hb_020902_010--Hb_014568_030 Hb_004735_010 Hb_004735_010 Hb_020902_010--Hb_004735_010 Hb_155375_010--Hb_000510_090 Hb_155375_010--Hb_001976_050 Hb_002217_310 Hb_002217_310 Hb_155375_010--Hb_002217_310 Hb_000243_280 Hb_000243_280 Hb_155375_010--Hb_000243_280 Hb_000749_150 Hb_000749_150 Hb_155375_010--Hb_000749_150 Hb_000620_080 Hb_000620_080 Hb_155375_010--Hb_000620_080 Hb_143813_010 Hb_143813_010 Hb_000510_090--Hb_143813_010 Hb_004724_100 Hb_004724_100 Hb_000510_090--Hb_004724_100 Hb_034585_030 Hb_034585_030 Hb_000510_090--Hb_034585_030 Hb_003777_270 Hb_003777_270 Hb_000510_090--Hb_003777_270 Hb_141131_010 Hb_141131_010 Hb_000510_090--Hb_141131_010 Hb_006447_010 Hb_006447_010 Hb_000442_160--Hb_006447_010 Hb_000365_360 Hb_000365_360 Hb_000442_160--Hb_000365_360 Hb_000442_160--Hb_000749_150 Hb_133271_020 Hb_133271_020 Hb_000442_160--Hb_133271_020 Hb_001246_100 Hb_001246_100 Hb_000442_160--Hb_001246_100 Hb_010608_010 Hb_010608_010 Hb_000442_160--Hb_010608_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.599063 0.156096 0.139597 0.166455 0.443712 1.32062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.328851 0.452405 0.460676 0.44726 0

CAGE analysis