Hb_000878_130

Information

Type -
Description -
Location Contig878: 207962-211032
Sequence    

Annotation

kegg
ID rcu:RCOM_0422850
description hypothetical protein
nr
ID XP_002524108.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FG14
description Myosin-binding protein 7 OS=Arabidopsis thaliana GN=MYOB7 PE=1 SV=1
trembl
ID B9SDN9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0422850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61312: 210931-211573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_020902_010 0.0937425233 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
3 Hb_000035_120 0.0992570148 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
4 Hb_010298_010 0.1055469052 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
5 Hb_004735_010 0.1102368744 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
6 Hb_006455_090 0.1136761961 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
7 Hb_003638_140 0.1238568913 - - protein binding protein, putative [Ricinus communis]
8 Hb_024714_030 0.1248852484 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
9 Hb_006455_110 0.1259377659 - - bromodomain-containing protein, putative [Ricinus communis]
10 Hb_000453_270 0.1265175558 - - PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Propithecus coquereli]
11 Hb_000347_150 0.1272793849 - - Nucleolysin TIAR [Morus notabilis]
12 Hb_000671_100 0.1300864745 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
13 Hb_034722_010 0.1309765812 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Populus euphratica]
14 Hb_012286_050 0.1313516754 - - PREDICTED: syntaxin-61 [Jatropha curcas]
15 Hb_000035_130 0.1368361436 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
16 Hb_002235_360 0.1377388905 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
17 Hb_002290_060 0.1386020521 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
18 Hb_001902_050 0.1390903884 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
19 Hb_035524_030 0.1396144404 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000700_090 0.1398600998 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000878_130 Hb_000878_130 Hb_020902_010 Hb_020902_010 Hb_000878_130--Hb_020902_010 Hb_000035_120 Hb_000035_120 Hb_000878_130--Hb_000035_120 Hb_010298_010 Hb_010298_010 Hb_000878_130--Hb_010298_010 Hb_004735_010 Hb_004735_010 Hb_000878_130--Hb_004735_010 Hb_006455_090 Hb_006455_090 Hb_000878_130--Hb_006455_090 Hb_003638_140 Hb_003638_140 Hb_000878_130--Hb_003638_140 Hb_036034_010 Hb_036034_010 Hb_020902_010--Hb_036034_010 Hb_000307_200 Hb_000307_200 Hb_020902_010--Hb_000307_200 Hb_012286_050 Hb_012286_050 Hb_020902_010--Hb_012286_050 Hb_014568_030 Hb_014568_030 Hb_020902_010--Hb_014568_030 Hb_020902_010--Hb_004735_010 Hb_000538_080 Hb_000538_080 Hb_000035_120--Hb_000538_080 Hb_000347_150 Hb_000347_150 Hb_000035_120--Hb_000347_150 Hb_000035_130 Hb_000035_130 Hb_000035_120--Hb_000035_130 Hb_002235_360 Hb_002235_360 Hb_000035_120--Hb_002235_360 Hb_002477_260 Hb_002477_260 Hb_000035_120--Hb_002477_260 Hb_000671_100 Hb_000671_100 Hb_010298_010--Hb_000671_100 Hb_010261_020 Hb_010261_020 Hb_010298_010--Hb_010261_020 Hb_024714_030 Hb_024714_030 Hb_010298_010--Hb_024714_030 Hb_033642_020 Hb_033642_020 Hb_010298_010--Hb_033642_020 Hb_000977_310 Hb_000977_310 Hb_010298_010--Hb_000977_310 Hb_010298_010--Hb_000307_200 Hb_000700_090 Hb_000700_090 Hb_004735_010--Hb_000700_090 Hb_001902_050 Hb_001902_050 Hb_004735_010--Hb_001902_050 Hb_006602_020 Hb_006602_020 Hb_004735_010--Hb_006602_020 Hb_006602_010 Hb_006602_010 Hb_004735_010--Hb_006602_010 Hb_004735_010--Hb_000671_100 Hb_000442_160 Hb_000442_160 Hb_004735_010--Hb_000442_160 Hb_006455_080 Hb_006455_080 Hb_006455_090--Hb_006455_080 Hb_006455_110 Hb_006455_110 Hb_006455_090--Hb_006455_110 Hb_003711_040 Hb_003711_040 Hb_006455_090--Hb_003711_040 Hb_006455_090--Hb_012286_050 Hb_006455_090--Hb_000307_200 Hb_006455_090--Hb_020902_010 Hb_002215_050 Hb_002215_050 Hb_003638_140--Hb_002215_050 Hb_001369_060 Hb_001369_060 Hb_003638_140--Hb_001369_060 Hb_003638_140--Hb_024714_030 Hb_011496_010 Hb_011496_010 Hb_003638_140--Hb_011496_010 Hb_000608_120 Hb_000608_120 Hb_003638_140--Hb_000608_120 Hb_001804_060 Hb_001804_060 Hb_003638_140--Hb_001804_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.7345 14.3433 3.53802 5.46161 31.2214 111.52
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.3823 25.9423 35.4977 8.53215 7.92739

CAGE analysis