Hb_000538_080

Information

Type -
Description -
Location Contig538: 77315-84730
Sequence    

Annotation

kegg
ID rcu:RCOM_1603590
description Ran GTPase binding protein, putative
nr
ID XP_002526580.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID B9SKR1
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_1603590 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase herc1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47634: 77362-79892 , PASA_asmbl_47635: 79918-80532 , PASA_asmbl_47636: 80560-80732 , PASA_asmbl_47637: 80766-81273 , PASA_asmbl_47639: 81910-82025 , PASA_asmbl_47640: 82030-83852 , PASA_asmbl_47641: 84182-84588 , PASA_asmbl_47642: 83879-84380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_080 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_000035_120 0.077839995 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
3 Hb_000035_130 0.1349092201 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
4 Hb_003494_240 0.1465944879 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
5 Hb_024714_030 0.1467620554 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
6 Hb_002477_260 0.1480407926 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
7 Hb_000878_130 0.1487558669 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003638_140 0.1511386715 - - protein binding protein, putative [Ricinus communis]
9 Hb_001825_010 0.151206635 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
10 Hb_006740_020 0.1538513034 - - PREDICTED: bis(5'-adenosyl)-triphosphatase [Jatropha curcas]
11 Hb_000347_150 0.1568492002 - - Nucleolysin TIAR [Morus notabilis]
12 Hb_006723_020 0.1576114852 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
13 Hb_020902_010 0.1590847075 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
14 Hb_002235_360 0.1613294358 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
15 Hb_002986_050 0.1621874989 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
16 Hb_002903_110 0.1623843185 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
17 Hb_002215_050 0.1626044804 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
18 Hb_011496_010 0.1639688451 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
19 Hb_001936_050 0.1644547468 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
20 Hb_034722_010 0.1646090299 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Populus euphratica]

Gene co-expression network

sample Hb_000538_080 Hb_000538_080 Hb_000035_120 Hb_000035_120 Hb_000538_080--Hb_000035_120 Hb_000035_130 Hb_000035_130 Hb_000538_080--Hb_000035_130 Hb_003494_240 Hb_003494_240 Hb_000538_080--Hb_003494_240 Hb_024714_030 Hb_024714_030 Hb_000538_080--Hb_024714_030 Hb_002477_260 Hb_002477_260 Hb_000538_080--Hb_002477_260 Hb_000878_130 Hb_000878_130 Hb_000538_080--Hb_000878_130 Hb_000035_120--Hb_000878_130 Hb_000347_150 Hb_000347_150 Hb_000035_120--Hb_000347_150 Hb_000035_120--Hb_000035_130 Hb_002235_360 Hb_002235_360 Hb_000035_120--Hb_002235_360 Hb_000035_120--Hb_002477_260 Hb_073339_010 Hb_073339_010 Hb_000035_130--Hb_073339_010 Hb_006723_020 Hb_006723_020 Hb_000035_130--Hb_006723_020 Hb_143947_010 Hb_143947_010 Hb_000035_130--Hb_143947_010 Hb_000035_130--Hb_000878_130 Hb_001454_060 Hb_001454_060 Hb_003494_240--Hb_001454_060 Hb_000608_120 Hb_000608_120 Hb_003494_240--Hb_000608_120 Hb_000703_090 Hb_000703_090 Hb_003494_240--Hb_000703_090 Hb_002215_050 Hb_002215_050 Hb_003494_240--Hb_002215_050 Hb_030312_040 Hb_030312_040 Hb_003494_240--Hb_030312_040 Hb_003638_140 Hb_003638_140 Hb_003494_240--Hb_003638_140 Hb_002014_080 Hb_002014_080 Hb_024714_030--Hb_002014_080 Hb_000671_100 Hb_000671_100 Hb_024714_030--Hb_000671_100 Hb_024714_030--Hb_003638_140 Hb_014568_030 Hb_014568_030 Hb_024714_030--Hb_014568_030 Hb_024714_030--Hb_002215_050 Hb_035524_030 Hb_035524_030 Hb_024714_030--Hb_035524_030 Hb_127979_010 Hb_127979_010 Hb_002477_260--Hb_127979_010 Hb_002903_110 Hb_002903_110 Hb_002477_260--Hb_002903_110 Hb_011496_010 Hb_011496_010 Hb_002477_260--Hb_011496_010 Hb_003404_030 Hb_003404_030 Hb_002477_260--Hb_003404_030 Hb_001936_050 Hb_001936_050 Hb_002477_260--Hb_001936_050 Hb_000057_060 Hb_000057_060 Hb_002477_260--Hb_000057_060 Hb_020902_010 Hb_020902_010 Hb_000878_130--Hb_020902_010 Hb_010298_010 Hb_010298_010 Hb_000878_130--Hb_010298_010 Hb_004735_010 Hb_004735_010 Hb_000878_130--Hb_004735_010 Hb_006455_090 Hb_006455_090 Hb_000878_130--Hb_006455_090 Hb_000878_130--Hb_003638_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.602 8.999 0.54686 4.94692 12.5603 33
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.16938 6.12265 15.2317 1.09831 1.4053

CAGE analysis