Hb_000035_130

Information

Type -
Description -
Location Contig35: 180635-181273
Sequence    

Annotation

kegg
ID -
description -
nr
ID KGN55437.1
description hypothetical protein Csa_4G652025 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A0A0A0L4B0
description Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652025 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_130 0.0 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
2 Hb_073339_010 0.1065863712 - - hypothetical protein 30 [Hevea brasiliensis]
3 Hb_006723_020 0.1179980649 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
4 Hb_143947_010 0.1226783655 - - PREDICTED: deSI-like protein At4g17486 isoform X2 [Pyrus x bretschneideri]
5 Hb_000035_120 0.1274503817 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
6 Hb_000538_080 0.1349092201 - - Ran GTPase binding protein, putative [Ricinus communis]
7 Hb_000878_130 0.1368361436 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001976_050 0.1376588131 - - PREDICTED: protein SKIP34 [Jatropha curcas]
9 Hb_000347_150 0.1485015101 - - Nucleolysin TIAR [Morus notabilis]
10 Hb_005965_010 0.15674829 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
11 Hb_006455_110 0.1583793043 - - bromodomain-containing protein, putative [Ricinus communis]
12 Hb_003494_240 0.1624831788 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
13 Hb_024714_030 0.1640644277 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
14 Hb_003638_140 0.167932864 - - protein binding protein, putative [Ricinus communis]
15 Hb_020902_010 0.1682146719 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
16 Hb_000671_100 0.1708951041 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
17 Hb_010298_010 0.1713793344 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
18 Hb_004735_010 0.1726192007 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
19 Hb_006740_020 0.1727943895 - - PREDICTED: bis(5'-adenosyl)-triphosphatase [Jatropha curcas]
20 Hb_000608_180 0.1741080314 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_000035_130 Hb_000035_130 Hb_073339_010 Hb_073339_010 Hb_000035_130--Hb_073339_010 Hb_006723_020 Hb_006723_020 Hb_000035_130--Hb_006723_020 Hb_143947_010 Hb_143947_010 Hb_000035_130--Hb_143947_010 Hb_000035_120 Hb_000035_120 Hb_000035_130--Hb_000035_120 Hb_000538_080 Hb_000538_080 Hb_000035_130--Hb_000538_080 Hb_000878_130 Hb_000878_130 Hb_000035_130--Hb_000878_130 Hb_005965_010 Hb_005965_010 Hb_073339_010--Hb_005965_010 Hb_006455_110 Hb_006455_110 Hb_073339_010--Hb_006455_110 Hb_001976_050 Hb_001976_050 Hb_073339_010--Hb_001976_050 Hb_073339_010--Hb_006723_020 Hb_012807_080 Hb_012807_080 Hb_073339_010--Hb_012807_080 Hb_030328_010 Hb_030328_010 Hb_006723_020--Hb_030328_010 Hb_006723_020--Hb_006455_110 Hb_000347_150 Hb_000347_150 Hb_006723_020--Hb_000347_150 Hb_139859_010 Hb_139859_010 Hb_006723_020--Hb_139859_010 Hb_001818_080 Hb_001818_080 Hb_143947_010--Hb_001818_080 Hb_000703_090 Hb_000703_090 Hb_143947_010--Hb_000703_090 Hb_003494_240 Hb_003494_240 Hb_143947_010--Hb_003494_240 Hb_143947_010--Hb_001976_050 Hb_010298_010 Hb_010298_010 Hb_143947_010--Hb_010298_010 Hb_000035_120--Hb_000538_080 Hb_000035_120--Hb_000878_130 Hb_000035_120--Hb_000347_150 Hb_002235_360 Hb_002235_360 Hb_000035_120--Hb_002235_360 Hb_002477_260 Hb_002477_260 Hb_000035_120--Hb_002477_260 Hb_000538_080--Hb_003494_240 Hb_024714_030 Hb_024714_030 Hb_000538_080--Hb_024714_030 Hb_000538_080--Hb_002477_260 Hb_000538_080--Hb_000878_130 Hb_020902_010 Hb_020902_010 Hb_000878_130--Hb_020902_010 Hb_000878_130--Hb_010298_010 Hb_004735_010 Hb_004735_010 Hb_000878_130--Hb_004735_010 Hb_006455_090 Hb_006455_090 Hb_000878_130--Hb_006455_090 Hb_003638_140 Hb_003638_140 Hb_000878_130--Hb_003638_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
124.581 49.4813 4.27729 36.5731 43.2747 263.215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.4099 50.8023 67.293 14.077 7.63539

CAGE analysis