Hb_030328_010

Information

Type -
Description -
Location Contig30328: 1538-5719
Sequence    

Annotation

kegg
ID cic:CICLE_v10015936mg
description hypothetical protein
nr
ID XP_006448390.1
description hypothetical protein CICLE_v10015936mg [Citrus clementina]
swissprot
ID Q9XI60
description Lipid phosphate phosphatase 2 OS=Arabidopsis thaliana GN=LPP2 PE=2 SV=1
trembl
ID V4U6V5
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015936mg PE=4 SV=1
Gene Ontology
ID GO:0005887
description lipid phosphate phosphatase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32012: 4903-5348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030328_010 0.0 - - hypothetical protein CICLE_v10015936mg [Citrus clementina]
2 Hb_171788_010 0.1315466165 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
3 Hb_006723_020 0.1349539911 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
4 Hb_001386_140 0.1379193955 - - PREDICTED: B2 protein [Jatropha curcas]
5 Hb_010565_010 0.1386169122 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
6 Hb_058381_010 0.1398233659 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
7 Hb_054586_020 0.1456386578 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
8 Hb_008714_020 0.1478476629 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
9 Hb_001040_120 0.1482758627 - - allantoinase, putative [Ricinus communis]
10 Hb_015354_010 0.1487587148 - - PREDICTED: B2 protein [Jatropha curcas]
11 Hb_002067_120 0.1509613396 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
12 Hb_083043_010 0.1515397007 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
13 Hb_009969_030 0.1519565484 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
14 Hb_001040_160 0.1525369022 - - glutaredoxin, grx, putative [Ricinus communis]
15 Hb_010180_040 0.1553141638 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
16 Hb_187739_020 0.1577990711 - - PREDICTED: B2 protein [Jatropha curcas]
17 Hb_002815_060 0.1589537173 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
18 Hb_003711_040 0.160959398 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
19 Hb_003376_070 0.1620526748 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
20 Hb_002248_140 0.1631549542 - - acetylglucosaminyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_030328_010 Hb_030328_010 Hb_171788_010 Hb_171788_010 Hb_030328_010--Hb_171788_010 Hb_006723_020 Hb_006723_020 Hb_030328_010--Hb_006723_020 Hb_001386_140 Hb_001386_140 Hb_030328_010--Hb_001386_140 Hb_010565_010 Hb_010565_010 Hb_030328_010--Hb_010565_010 Hb_058381_010 Hb_058381_010 Hb_030328_010--Hb_058381_010 Hb_054586_020 Hb_054586_020 Hb_030328_010--Hb_054586_020 Hb_139859_010 Hb_139859_010 Hb_171788_010--Hb_139859_010 Hb_083043_010 Hb_083043_010 Hb_171788_010--Hb_083043_010 Hb_006455_110 Hb_006455_110 Hb_171788_010--Hb_006455_110 Hb_003711_040 Hb_003711_040 Hb_171788_010--Hb_003711_040 Hb_000486_060 Hb_000486_060 Hb_171788_010--Hb_000486_060 Hb_000035_130 Hb_000035_130 Hb_006723_020--Hb_000035_130 Hb_073339_010 Hb_073339_010 Hb_006723_020--Hb_073339_010 Hb_006723_020--Hb_006455_110 Hb_000347_150 Hb_000347_150 Hb_006723_020--Hb_000347_150 Hb_006723_020--Hb_139859_010 Hb_001386_140--Hb_010565_010 Hb_005023_030 Hb_005023_030 Hb_001386_140--Hb_005023_030 Hb_006663_090 Hb_006663_090 Hb_001386_140--Hb_006663_090 Hb_002067_120 Hb_002067_120 Hb_001386_140--Hb_002067_120 Hb_115477_010 Hb_115477_010 Hb_001386_140--Hb_115477_010 Hb_001386_140--Hb_054586_020 Hb_010565_010--Hb_002067_120 Hb_000606_080 Hb_000606_080 Hb_010565_010--Hb_000606_080 Hb_010565_010--Hb_005023_030 Hb_004934_070 Hb_004934_070 Hb_010565_010--Hb_004934_070 Hb_005714_130 Hb_005714_130 Hb_010565_010--Hb_005714_130 Hb_058381_010--Hb_083043_010 Hb_187739_020 Hb_187739_020 Hb_058381_010--Hb_187739_020 Hb_000159_110 Hb_000159_110 Hb_058381_010--Hb_000159_110 Hb_173178_020 Hb_173178_020 Hb_058381_010--Hb_173178_020 Hb_015354_010 Hb_015354_010 Hb_058381_010--Hb_015354_010 Hb_006132_100 Hb_006132_100 Hb_054586_020--Hb_006132_100 Hb_054586_020--Hb_010565_010 Hb_058702_010 Hb_058702_010 Hb_054586_020--Hb_058702_010 Hb_007333_040 Hb_007333_040 Hb_054586_020--Hb_007333_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.368 12.2339 3.39706 13.5941 9.98606 38.9879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.07192 2.95532 8.31821 5.76875 1.94923

CAGE analysis