Hb_000159_110

Information

Type -
Description -
Location Contig159: 184700-186815
Sequence    

Annotation

kegg
ID cmo:103488767
description thioredoxin-like protein YLS8
nr
ID XP_008361907.1
description PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica]
swissprot
ID Q9FE62
description Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana GN=YLS8 PE=2 SV=1
trembl
ID M5XFL9
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013047mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description thioredoxin-like protein yls8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14116: 184782-186708 , PASA_asmbl_14117: 185935-186382
cDNA
(Sanger)
(ID:Location)		 028_N06r.ab1: 187313-187934

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000159_110 0.0 - - PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica]
2 Hb_002411_130 0.0973536399 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
3 Hb_083043_010 0.117336554 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
4 Hb_009119_030 0.1342454033 - - GMFP4 [Medicago truncatula]
5 Hb_000160_220 0.1384941739 - - PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]
6 Hb_001752_040 0.1406699534 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
7 Hb_058702_010 0.1410103434 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
8 Hb_121467_010 0.1418069971 - - tubulin-specific chaperone E, putative [Ricinus communis]
9 Hb_058381_010 0.1445873439 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
10 Hb_003581_020 0.1457207953 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
11 Hb_002903_080 0.1484647089 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
12 Hb_001546_050 0.1489847057 - - -
13 Hb_000365_160 0.149001314 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
14 Hb_000991_070 0.149119911 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]
15 Hb_002815_060 0.1491208412 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
16 Hb_000029_320 0.1491249122 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
17 Hb_000424_230 0.150126999 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]
18 Hb_006114_020 0.1526575265 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002687_190 0.1530058219 - - prolyl oligopeptidase [Cicer arietinum]
20 Hb_001901_080 0.1539296976 - - PREDICTED: xylose isomerase [Jatropha curcas]

Gene co-expression network

sample Hb_000159_110 Hb_000159_110 Hb_002411_130 Hb_002411_130 Hb_000159_110--Hb_002411_130 Hb_083043_010 Hb_083043_010 Hb_000159_110--Hb_083043_010 Hb_009119_030 Hb_009119_030 Hb_000159_110--Hb_009119_030 Hb_000160_220 Hb_000160_220 Hb_000159_110--Hb_000160_220 Hb_001752_040 Hb_001752_040 Hb_000159_110--Hb_001752_040 Hb_058702_010 Hb_058702_010 Hb_000159_110--Hb_058702_010 Hb_002411_130--Hb_001752_040 Hb_002411_130--Hb_009119_030 Hb_121467_010 Hb_121467_010 Hb_002411_130--Hb_121467_010 Hb_003376_070 Hb_003376_070 Hb_002411_130--Hb_003376_070 Hb_001767_120 Hb_001767_120 Hb_002411_130--Hb_001767_120 Hb_003711_040 Hb_003711_040 Hb_083043_010--Hb_003711_040 Hb_003581_020 Hb_003581_020 Hb_083043_010--Hb_003581_020 Hb_002811_120 Hb_002811_120 Hb_083043_010--Hb_002811_120 Hb_004881_050 Hb_004881_050 Hb_083043_010--Hb_004881_050 Hb_006114_020 Hb_006114_020 Hb_083043_010--Hb_006114_020 Hb_150204_010 Hb_150204_010 Hb_083043_010--Hb_150204_010 Hb_002320_070 Hb_002320_070 Hb_009119_030--Hb_002320_070 Hb_000130_190 Hb_000130_190 Hb_009119_030--Hb_000130_190 Hb_001901_080 Hb_001901_080 Hb_009119_030--Hb_001901_080 Hb_009119_030--Hb_121467_010 Hb_000160_220--Hb_058702_010 Hb_000567_050 Hb_000567_050 Hb_000160_220--Hb_000567_050 Hb_010180_040 Hb_010180_040 Hb_000160_220--Hb_010180_040 Hb_010931_040 Hb_010931_040 Hb_000160_220--Hb_010931_040 Hb_187739_020 Hb_187739_020 Hb_000160_220--Hb_187739_020 Hb_003428_070 Hb_003428_070 Hb_000160_220--Hb_003428_070 Hb_000025_050 Hb_000025_050 Hb_001752_040--Hb_000025_050 Hb_001752_040--Hb_001767_120 Hb_106411_010 Hb_106411_010 Hb_001752_040--Hb_106411_010 Hb_019813_010 Hb_019813_010 Hb_001752_040--Hb_019813_010 Hb_000803_110 Hb_000803_110 Hb_001752_040--Hb_000803_110 Hb_102269_010 Hb_102269_010 Hb_058702_010--Hb_102269_010 Hb_005494_020 Hb_005494_020 Hb_058702_010--Hb_005494_020 Hb_002960_160 Hb_002960_160 Hb_058702_010--Hb_002960_160 Hb_002903_080 Hb_002903_080 Hb_058702_010--Hb_002903_080 Hb_002301_260 Hb_002301_260 Hb_058702_010--Hb_002301_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.67506 8.47685 6.39964 9.92121 21.2863 34.7137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.55389 5.03936 1.79861 5.02831 3.30322

CAGE analysis