Hb_121467_010

Information

Type -
Description -
Location Contig121467: 1278-2621
Sequence    

Annotation

kegg
ID rcu:RCOM_0742380
description tubulin-specific chaperone E, putative (EC:3.1.1.3)
nr
ID XP_002525519.1
description tubulin-specific chaperone E, putative [Ricinus communis]
swissprot
ID Q8GRL7
description Tubulin-folding cofactor E OS=Arabidopsis thaliana GN=TFCE PE=2 SV=1
trembl
ID B9SHQ0
description Tubulin-specific chaperone E, putative OS=Ricinus communis GN=RCOM_0742380 PE=4 SV=1
Gene Ontology
ID GO:0009507
description tubulin-folding cofactor e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121467_010 0.0 - - tubulin-specific chaperone E, putative [Ricinus communis]
2 Hb_088428_010 0.0971466987 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
3 Hb_000159_110 0.1418069971 - - PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica]
4 Hb_009119_030 0.1418561779 - - GMFP4 [Medicago truncatula]
5 Hb_002411_130 0.1426022184 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
6 Hb_001767_120 0.1432589956 - - -
7 Hb_070469_010 0.1493541834 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
8 Hb_000486_060 0.1538456981 - - PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]
9 Hb_000130_190 0.1545233911 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
10 Hb_019053_020 0.1552190824 - - hypothetical protein MIMGU_mgv1a0105441mg, partial [Erythranthe guttata]
11 Hb_171788_010 0.1567967795 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
12 Hb_002815_060 0.1596400541 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
13 Hb_178041_010 0.1606400467 - - PREDICTED: signal peptide peptidase-like 2 [Populus euphratica]
14 Hb_130134_030 0.1607485623 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
15 Hb_051437_010 0.1619923214 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
16 Hb_142751_010 0.1650405444 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011206_010 0.1653937822 - - PREDICTED: something about silencing protein 10 isoform X2 [Vitis vinifera]
18 Hb_126295_010 0.168327693 - - PREDICTED: protein SEH1 [Jatropha curcas]
19 Hb_004935_080 0.1698577835 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
20 Hb_037793_010 0.1701040485 - - PREDICTED: microtubule-associated protein 70-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_121467_010 Hb_121467_010 Hb_088428_010 Hb_088428_010 Hb_121467_010--Hb_088428_010 Hb_000159_110 Hb_000159_110 Hb_121467_010--Hb_000159_110 Hb_009119_030 Hb_009119_030 Hb_121467_010--Hb_009119_030 Hb_002411_130 Hb_002411_130 Hb_121467_010--Hb_002411_130 Hb_001767_120 Hb_001767_120 Hb_121467_010--Hb_001767_120 Hb_070469_010 Hb_070469_010 Hb_121467_010--Hb_070469_010 Hb_142751_010 Hb_142751_010 Hb_088428_010--Hb_142751_010 Hb_178041_010 Hb_178041_010 Hb_088428_010--Hb_178041_010 Hb_130134_030 Hb_130134_030 Hb_088428_010--Hb_130134_030 Hb_088428_010--Hb_009119_030 Hb_000486_060 Hb_000486_060 Hb_088428_010--Hb_000486_060 Hb_000159_110--Hb_002411_130 Hb_083043_010 Hb_083043_010 Hb_000159_110--Hb_083043_010 Hb_000159_110--Hb_009119_030 Hb_000160_220 Hb_000160_220 Hb_000159_110--Hb_000160_220 Hb_001752_040 Hb_001752_040 Hb_000159_110--Hb_001752_040 Hb_058702_010 Hb_058702_010 Hb_000159_110--Hb_058702_010 Hb_002320_070 Hb_002320_070 Hb_009119_030--Hb_002320_070 Hb_009119_030--Hb_002411_130 Hb_000130_190 Hb_000130_190 Hb_009119_030--Hb_000130_190 Hb_001901_080 Hb_001901_080 Hb_009119_030--Hb_001901_080 Hb_002411_130--Hb_001752_040 Hb_003376_070 Hb_003376_070 Hb_002411_130--Hb_003376_070 Hb_002411_130--Hb_001767_120 Hb_005714_130 Hb_005714_130 Hb_001767_120--Hb_005714_130 Hb_001767_120--Hb_001752_040 Hb_002508_010 Hb_002508_010 Hb_001767_120--Hb_002508_010 Hb_128998_010 Hb_128998_010 Hb_001767_120--Hb_128998_010 Hb_171788_010 Hb_171788_010 Hb_001767_120--Hb_171788_010 Hb_004935_080 Hb_004935_080 Hb_070469_010--Hb_004935_080 Hb_076874_010 Hb_076874_010 Hb_070469_010--Hb_076874_010 Hb_162040_010 Hb_162040_010 Hb_070469_010--Hb_162040_010 Hb_126295_010 Hb_126295_010 Hb_070469_010--Hb_126295_010 Hb_003925_070 Hb_003925_070 Hb_070469_010--Hb_003925_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.1929 18.3033 22.0963 42.0527 41.8767 103.496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.82857 9.83677 4.53414 19.8373 3.80495

CAGE analysis