Hb_162040_010

Information

Type -
Description -
Location Contig162040: 3369-5506
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14602: 3251-5724 , PASA_asmbl_14603: 3251-5661 , PASA_asmbl_14604: 3251-4272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162040_010 0.0 - - -
2 Hb_007951_040 0.128044474 - - signal peptidase family protein [Populus trichocarpa]
3 Hb_001025_110 0.1334456899 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001454_380 0.1349074321 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
5 Hb_000959_250 0.1373495261 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
6 Hb_070469_010 0.1374510332 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
7 Hb_003050_370 0.1429161784 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
8 Hb_076874_010 0.1442146701 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
9 Hb_003897_040 0.1459746884 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
10 Hb_003925_070 0.1461220531 - - ATOZI1, putative [Ricinus communis]
11 Hb_161478_010 0.1466500511 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_002836_140 0.1466930118 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
13 Hb_000776_100 0.1471519618 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
14 Hb_001769_080 0.1478079858 - - hypothetical protein SORBIDRAFT_10g023200 [Sorghum bicolor]
15 Hb_002447_040 0.1483164058 - - Cycloartenol-C-24-methyltransferase -like protein [Gossypium arboreum]
16 Hb_126295_010 0.1486232184 - - PREDICTED: protein SEH1 [Jatropha curcas]
17 Hb_000025_050 0.1490927626 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
18 Hb_000138_130 0.1495683264 - - hypothetical protein JCGZ_25540 [Jatropha curcas]
19 Hb_002783_170 0.1499042234 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
20 Hb_106411_010 0.1501576781 - - Ribosomal protein S25 family protein [Theobroma cacao]

Gene co-expression network

sample Hb_162040_010 Hb_162040_010 Hb_007951_040 Hb_007951_040 Hb_162040_010--Hb_007951_040 Hb_001025_110 Hb_001025_110 Hb_162040_010--Hb_001025_110 Hb_001454_380 Hb_001454_380 Hb_162040_010--Hb_001454_380 Hb_000959_250 Hb_000959_250 Hb_162040_010--Hb_000959_250 Hb_070469_010 Hb_070469_010 Hb_162040_010--Hb_070469_010 Hb_003050_370 Hb_003050_370 Hb_162040_010--Hb_003050_370 Hb_002836_140 Hb_002836_140 Hb_007951_040--Hb_002836_140 Hb_002783_170 Hb_002783_170 Hb_007951_040--Hb_002783_170 Hb_000776_100 Hb_000776_100 Hb_007951_040--Hb_000776_100 Hb_003688_090 Hb_003688_090 Hb_007951_040--Hb_003688_090 Hb_003038_120 Hb_003038_120 Hb_007951_040--Hb_003038_120 Hb_000915_080 Hb_000915_080 Hb_007951_040--Hb_000915_080 Hb_001769_080 Hb_001769_080 Hb_001025_110--Hb_001769_080 Hb_003641_060 Hb_003641_060 Hb_001025_110--Hb_003641_060 Hb_022181_030 Hb_022181_030 Hb_001025_110--Hb_022181_030 Hb_033834_030 Hb_033834_030 Hb_001025_110--Hb_033834_030 Hb_000785_080 Hb_000785_080 Hb_001025_110--Hb_000785_080 Hb_000302_310 Hb_000302_310 Hb_001025_110--Hb_000302_310 Hb_001454_380--Hb_002783_170 Hb_002309_010 Hb_002309_010 Hb_001454_380--Hb_002309_010 Hb_000844_070 Hb_000844_070 Hb_001454_380--Hb_000844_070 Hb_000480_010 Hb_000480_010 Hb_001454_380--Hb_000480_010 Hb_019053_020 Hb_019053_020 Hb_001454_380--Hb_019053_020 Hb_005754_010 Hb_005754_010 Hb_001454_380--Hb_005754_010 Hb_003897_040 Hb_003897_040 Hb_000959_250--Hb_003897_040 Hb_000648_100 Hb_000648_100 Hb_000959_250--Hb_000648_100 Hb_000868_060 Hb_000868_060 Hb_000959_250--Hb_000868_060 Hb_001832_130 Hb_001832_130 Hb_000959_250--Hb_001832_130 Hb_000959_250--Hb_003050_370 Hb_002398_030 Hb_002398_030 Hb_000959_250--Hb_002398_030 Hb_004935_080 Hb_004935_080 Hb_070469_010--Hb_004935_080 Hb_076874_010 Hb_076874_010 Hb_070469_010--Hb_076874_010 Hb_126295_010 Hb_126295_010 Hb_070469_010--Hb_126295_010 Hb_003925_070 Hb_003925_070 Hb_070469_010--Hb_003925_070 Hb_121467_010 Hb_121467_010 Hb_070469_010--Hb_121467_010 Hb_001085_320 Hb_001085_320 Hb_003050_370--Hb_001085_320 Hb_073973_160 Hb_073973_160 Hb_003050_370--Hb_073973_160 Hb_003050_370--Hb_000868_060 Hb_000785_030 Hb_000785_030 Hb_003050_370--Hb_000785_030 Hb_001894_030 Hb_001894_030 Hb_003050_370--Hb_001894_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.49671 1.75792 6.60341 5.53325 4.30626 8.60491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.84912 2.35583 0.98344 3.30329 0.867128

CAGE analysis