Hb_003050_370

Information

Type -
Description -
Location Contig3050: 335542-338206
Sequence    

Annotation

kegg
ID rcu:RCOM_1253560
description mitochondrial inner membrane protease subunit, putative
nr
ID XP_002522302.1
description mitochondrial inner membrane protease subunit, putative [Ricinus communis]
swissprot
ID Q9CQU8
description Mitochondrial inner membrane protease subunit 1 OS=Mus musculus GN=Immp1l PE=2 SV=1
trembl
ID B9S8I3
description Mitochondrial inner membrane protease subunit, putative OS=Ricinus communis GN=RCOM_1253560 PE=3 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial inner membrane protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32167: 335554-338180 , PASA_asmbl_32168: 335879-336746 , PASA_asmbl_32169: 337345-337500
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_370 0.0 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
2 Hb_001085_320 0.0855622393 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
3 Hb_073973_160 0.0880240293 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
4 Hb_000868_060 0.0943307712 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
5 Hb_000785_030 0.095562625 - - hypothetical protein RCOM_0808030 [Ricinus communis]
6 Hb_001894_030 0.0974011475 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
7 Hb_000959_250 0.0993819088 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
8 Hb_012023_020 0.1001150795 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
9 Hb_000009_480 0.1004968596 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
10 Hb_000270_630 0.1046428697 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
11 Hb_000059_140 0.1063890446 - - rnase h, putative [Ricinus communis]
12 Hb_000480_010 0.1067769035 - - conserved hypothetical protein [Ricinus communis]
13 Hb_091384_010 0.1091756859 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
14 Hb_002273_130 0.11040565 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
15 Hb_001910_020 0.1105528731 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
16 Hb_030131_040 0.1107674511 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
17 Hb_080313_010 0.111149211 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
18 Hb_000703_210 0.1114673874 - - Inactive protein kinase [Gossypium arboreum]
19 Hb_000331_160 0.1119976891 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
20 Hb_000648_100 0.1124619732 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]

Gene co-expression network

sample Hb_003050_370 Hb_003050_370 Hb_001085_320 Hb_001085_320 Hb_003050_370--Hb_001085_320 Hb_073973_160 Hb_073973_160 Hb_003050_370--Hb_073973_160 Hb_000868_060 Hb_000868_060 Hb_003050_370--Hb_000868_060 Hb_000785_030 Hb_000785_030 Hb_003050_370--Hb_000785_030 Hb_001894_030 Hb_001894_030 Hb_003050_370--Hb_001894_030 Hb_000959_250 Hb_000959_250 Hb_003050_370--Hb_000959_250 Hb_030131_040 Hb_030131_040 Hb_001085_320--Hb_030131_040 Hb_001085_320--Hb_000868_060 Hb_000059_140 Hb_000059_140 Hb_001085_320--Hb_000059_140 Hb_015763_030 Hb_015763_030 Hb_001085_320--Hb_015763_030 Hb_007558_120 Hb_007558_120 Hb_001085_320--Hb_007558_120 Hb_001454_320 Hb_001454_320 Hb_001085_320--Hb_001454_320 Hb_003858_040 Hb_003858_040 Hb_073973_160--Hb_003858_040 Hb_001910_020 Hb_001910_020 Hb_073973_160--Hb_001910_020 Hb_000375_030 Hb_000375_030 Hb_073973_160--Hb_000375_030 Hb_002320_070 Hb_002320_070 Hb_073973_160--Hb_002320_070 Hb_073973_160--Hb_001085_320 Hb_002888_070 Hb_002888_070 Hb_000868_060--Hb_002888_070 Hb_000395_020 Hb_000395_020 Hb_000868_060--Hb_000395_020 Hb_001050_010 Hb_001050_010 Hb_000868_060--Hb_001050_010 Hb_001102_080 Hb_001102_080 Hb_000868_060--Hb_001102_080 Hb_001040_040 Hb_001040_040 Hb_000868_060--Hb_001040_040 Hb_000392_050 Hb_000392_050 Hb_000785_030--Hb_000392_050 Hb_009222_010 Hb_009222_010 Hb_000785_030--Hb_009222_010 Hb_000959_270 Hb_000959_270 Hb_000785_030--Hb_000959_270 Hb_002942_050 Hb_002942_050 Hb_000785_030--Hb_002942_050 Hb_000785_030--Hb_001910_020 Hb_000785_030--Hb_000059_140 Hb_000211_110 Hb_000211_110 Hb_001894_030--Hb_000211_110 Hb_000617_220 Hb_000617_220 Hb_001894_030--Hb_000617_220 Hb_000640_020 Hb_000640_020 Hb_001894_030--Hb_000640_020 Hb_001357_380 Hb_001357_380 Hb_001894_030--Hb_001357_380 Hb_011848_010 Hb_011848_010 Hb_001894_030--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_001894_030--Hb_004701_030 Hb_003897_040 Hb_003897_040 Hb_000959_250--Hb_003897_040 Hb_000648_100 Hb_000648_100 Hb_000959_250--Hb_000648_100 Hb_000959_250--Hb_000868_060 Hb_001832_130 Hb_001832_130 Hb_000959_250--Hb_001832_130 Hb_002398_030 Hb_002398_030 Hb_000959_250--Hb_002398_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8724 9.98788 11.5691 12.326 20.6285 24.2972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4843 6.39258 4.54637 10.0742 2.27348

CAGE analysis