Hb_002320_070

Information

Type -
Description -
Location Contig2320: 65715-68180
Sequence    

Annotation

kegg
ID rcu:RCOM_1299920
description hypothetical protein
nr
ID XP_002519396.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q55909
description TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1
trembl
ID B9S077
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1299920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24401: 65241-68028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002320_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005408_020 0.1052104118 - - conserved hypothetical protein [Ricinus communis]
3 Hb_073973_160 0.1061078096 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
4 Hb_010925_020 0.1161991913 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
5 Hb_002307_350 0.1180478574 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
6 Hb_003894_040 0.1190461514 - - nucleotide binding protein, putative [Ricinus communis]
7 Hb_009119_030 0.1206095004 - - GMFP4 [Medicago truncatula]
8 Hb_012404_070 0.1214097116 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
9 Hb_001882_110 0.1220701306 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
10 Hb_000375_030 0.122595342 - - -
11 Hb_001584_370 0.127928714 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
12 Hb_002066_080 0.1281943182 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
13 Hb_002742_080 0.129990412 - - unknown [Populus trichocarpa]
14 Hb_000021_020 0.1314157173 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
15 Hb_004935_080 0.1318873265 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
16 Hb_126295_010 0.1322106897 - - PREDICTED: protein SEH1 [Jatropha curcas]
17 Hb_001369_350 0.133874023 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
18 Hb_001178_150 0.1344817574 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
19 Hb_001473_090 0.1351670758 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
20 Hb_001301_090 0.1356216823 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002320_070 Hb_002320_070 Hb_005408_020 Hb_005408_020 Hb_002320_070--Hb_005408_020 Hb_073973_160 Hb_073973_160 Hb_002320_070--Hb_073973_160 Hb_010925_020 Hb_010925_020 Hb_002320_070--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_002320_070--Hb_002307_350 Hb_003894_040 Hb_003894_040 Hb_002320_070--Hb_003894_040 Hb_009119_030 Hb_009119_030 Hb_002320_070--Hb_009119_030 Hb_005408_020--Hb_002307_350 Hb_011609_170 Hb_011609_170 Hb_005408_020--Hb_011609_170 Hb_000914_080 Hb_000914_080 Hb_005408_020--Hb_000914_080 Hb_008725_130 Hb_008725_130 Hb_005408_020--Hb_008725_130 Hb_009151_020 Hb_009151_020 Hb_005408_020--Hb_009151_020 Hb_030827_030 Hb_030827_030 Hb_005408_020--Hb_030827_030 Hb_003050_370 Hb_003050_370 Hb_073973_160--Hb_003050_370 Hb_003858_040 Hb_003858_040 Hb_073973_160--Hb_003858_040 Hb_001910_020 Hb_001910_020 Hb_073973_160--Hb_001910_020 Hb_000375_030 Hb_000375_030 Hb_073973_160--Hb_000375_030 Hb_001085_320 Hb_001085_320 Hb_073973_160--Hb_001085_320 Hb_003029_130 Hb_003029_130 Hb_010925_020--Hb_003029_130 Hb_001473_090 Hb_001473_090 Hb_010925_020--Hb_001473_090 Hb_000935_090 Hb_000935_090 Hb_010925_020--Hb_000935_090 Hb_001178_150 Hb_001178_150 Hb_010925_020--Hb_001178_150 Hb_001369_350 Hb_001369_350 Hb_010925_020--Hb_001369_350 Hb_029904_020 Hb_029904_020 Hb_010925_020--Hb_029904_020 Hb_002249_120 Hb_002249_120 Hb_002307_350--Hb_002249_120 Hb_002307_350--Hb_008725_130 Hb_017895_020 Hb_017895_020 Hb_002307_350--Hb_017895_020 Hb_002307_350--Hb_000914_080 Hb_000021_020 Hb_000021_020 Hb_002307_350--Hb_000021_020 Hb_002805_060 Hb_002805_060 Hb_003894_040--Hb_002805_060 Hb_000599_170 Hb_000599_170 Hb_003894_040--Hb_000599_170 Hb_018202_050 Hb_018202_050 Hb_003894_040--Hb_018202_050 Hb_027380_030 Hb_027380_030 Hb_003894_040--Hb_027380_030 Hb_001301_220 Hb_001301_220 Hb_003894_040--Hb_001301_220 Hb_006915_020 Hb_006915_020 Hb_003894_040--Hb_006915_020 Hb_002411_130 Hb_002411_130 Hb_009119_030--Hb_002411_130 Hb_000130_190 Hb_000130_190 Hb_009119_030--Hb_000130_190 Hb_000159_110 Hb_000159_110 Hb_009119_030--Hb_000159_110 Hb_001901_080 Hb_001901_080 Hb_009119_030--Hb_001901_080 Hb_121467_010 Hb_121467_010 Hb_009119_030--Hb_121467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.09609 10.5492 9.90648 11.9379 17.9505 20.7077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.97245 2.74463 3.25605 3.90987 4.24741

CAGE analysis