Hb_009119_030

Information

Type -
Description -
Location Contig9119: 25963-26578
Sequence    

Annotation

kegg
ID bvg:104888907
description tobamovirus multiplication protein 2A-like
nr
ID XP_003611446.1
description GMFP4 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID I3T4K6
description Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Gene Ontology
ID GO:0016021
description tobamovirus multiplication protein 2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62153: 18897-33978
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009119_030 0.0 - - GMFP4 [Medicago truncatula]
2 Hb_002320_070 0.1206095004 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002411_130 0.126478944 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
4 Hb_000130_190 0.1315762341 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
5 Hb_000159_110 0.1342454033 - - PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica]
6 Hb_001901_080 0.1357265912 - - PREDICTED: xylose isomerase [Jatropha curcas]
7 Hb_121467_010 0.1418561779 - - tubulin-specific chaperone E, putative [Ricinus communis]
8 Hb_000366_190 0.144189061 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
9 Hb_020805_010 0.1487197076 - - protein with unknown function [Ricinus communis]
10 Hb_002742_070 0.1494220793 - - PREDICTED: villin-4-like [Jatropha curcas]
11 Hb_003376_070 0.1501538139 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
12 Hb_002815_060 0.153143532 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
13 Hb_010254_020 0.1551648381 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
14 Hb_002235_120 0.1571336399 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
15 Hb_015026_060 0.1585207615 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
16 Hb_004935_080 0.1596129449 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
17 Hb_000029_320 0.1602982258 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
18 Hb_088428_010 0.1603826843 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
19 Hb_004994_340 0.1604388123 - - -
20 Hb_001040_120 0.162398915 - - allantoinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009119_030 Hb_009119_030 Hb_002320_070 Hb_002320_070 Hb_009119_030--Hb_002320_070 Hb_002411_130 Hb_002411_130 Hb_009119_030--Hb_002411_130 Hb_000130_190 Hb_000130_190 Hb_009119_030--Hb_000130_190 Hb_000159_110 Hb_000159_110 Hb_009119_030--Hb_000159_110 Hb_001901_080 Hb_001901_080 Hb_009119_030--Hb_001901_080 Hb_121467_010 Hb_121467_010 Hb_009119_030--Hb_121467_010 Hb_005408_020 Hb_005408_020 Hb_002320_070--Hb_005408_020 Hb_073973_160 Hb_073973_160 Hb_002320_070--Hb_073973_160 Hb_010925_020 Hb_010925_020 Hb_002320_070--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_002320_070--Hb_002307_350 Hb_003894_040 Hb_003894_040 Hb_002320_070--Hb_003894_040 Hb_002411_130--Hb_000159_110 Hb_001752_040 Hb_001752_040 Hb_002411_130--Hb_001752_040 Hb_002411_130--Hb_121467_010 Hb_003376_070 Hb_003376_070 Hb_002411_130--Hb_003376_070 Hb_001767_120 Hb_001767_120 Hb_002411_130--Hb_001767_120 Hb_028707_080 Hb_028707_080 Hb_000130_190--Hb_028707_080 Hb_004935_080 Hb_004935_080 Hb_000130_190--Hb_004935_080 Hb_000130_190--Hb_002320_070 Hb_008029_020 Hb_008029_020 Hb_000130_190--Hb_008029_020 Hb_019053_020 Hb_019053_020 Hb_000130_190--Hb_019053_020 Hb_083043_010 Hb_083043_010 Hb_000159_110--Hb_083043_010 Hb_000160_220 Hb_000160_220 Hb_000159_110--Hb_000160_220 Hb_000159_110--Hb_001752_040 Hb_058702_010 Hb_058702_010 Hb_000159_110--Hb_058702_010 Hb_031069_020 Hb_031069_020 Hb_001901_080--Hb_031069_020 Hb_078477_040 Hb_078477_040 Hb_001901_080--Hb_078477_040 Hb_001731_020 Hb_001731_020 Hb_001901_080--Hb_001731_020 Hb_001489_070 Hb_001489_070 Hb_001901_080--Hb_001489_070 Hb_006882_010 Hb_006882_010 Hb_001901_080--Hb_006882_010 Hb_006002_030 Hb_006002_030 Hb_001901_080--Hb_006002_030 Hb_088428_010 Hb_088428_010 Hb_121467_010--Hb_088428_010 Hb_121467_010--Hb_000159_110 Hb_121467_010--Hb_001767_120 Hb_070469_010 Hb_070469_010 Hb_121467_010--Hb_070469_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.11229 6.48413 4.22303 11.597 17.6602 22.221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.50884 1.55606 1.58489 3.016 2.91541

CAGE analysis