Hb_073973_160

Information

Type -
Description -
Location Contig73973: 129343-131612
Sequence    

Annotation

kegg
ID rcu:RCOM_1031910
description Transmembrane emp24 domain-containing protein 10 precursor, putative
nr
ID XP_002513789.1
description Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
swissprot
ID Q8RWM6
description Transmembrane emp24 domain-containing protein p24delta5 OS=Arabidopsis thaliana GN=At1g21900 PE=1 SV=1
trembl
ID B9RJ70
description Transmembrane emp24 domain-containing protein 10, putative OS=Ricinus communis GN=RCOM_1031910 PE=3 SV=1
Gene Ontology
ID GO:0016021
description transmembrane emp24 domain-containing protein p24delta3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56344: 129240-131921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073973_160 0.0 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
2 Hb_003050_370 0.0880240293 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
3 Hb_003858_040 0.0908370185 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
4 Hb_001910_020 0.0926327599 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
5 Hb_000375_030 0.1003152358 - - -
6 Hb_002320_070 0.1061078096 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001085_320 0.1080903176 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
8 Hb_000331_160 0.1086956054 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
9 Hb_005408_020 0.1091592513 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001489_070 0.1160988165 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
11 Hb_001882_040 0.1164432889 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
12 Hb_000703_210 0.1169738789 - - Inactive protein kinase [Gossypium arboreum]
13 Hb_001052_040 0.1184611333 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
14 Hb_001492_010 0.1191670412 - - PREDICTED: diacylglycerol kinase 3-like isoform X2 [Populus euphratica]
15 Hb_000785_030 0.119206305 - - hypothetical protein RCOM_0808030 [Ricinus communis]
16 Hb_000735_050 0.1193703554 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
17 Hb_011609_170 0.1194537345 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
18 Hb_000868_060 0.1199567693 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
19 Hb_012023_020 0.1209641542 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
20 Hb_003680_230 0.1223295208 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]

Gene co-expression network

sample Hb_073973_160 Hb_073973_160 Hb_003050_370 Hb_003050_370 Hb_073973_160--Hb_003050_370 Hb_003858_040 Hb_003858_040 Hb_073973_160--Hb_003858_040 Hb_001910_020 Hb_001910_020 Hb_073973_160--Hb_001910_020 Hb_000375_030 Hb_000375_030 Hb_073973_160--Hb_000375_030 Hb_002320_070 Hb_002320_070 Hb_073973_160--Hb_002320_070 Hb_001085_320 Hb_001085_320 Hb_073973_160--Hb_001085_320 Hb_003050_370--Hb_001085_320 Hb_000868_060 Hb_000868_060 Hb_003050_370--Hb_000868_060 Hb_000785_030 Hb_000785_030 Hb_003050_370--Hb_000785_030 Hb_001894_030 Hb_001894_030 Hb_003050_370--Hb_001894_030 Hb_000959_250 Hb_000959_250 Hb_003050_370--Hb_000959_250 Hb_000009_480 Hb_000009_480 Hb_003858_040--Hb_000009_480 Hb_001050_010 Hb_001050_010 Hb_003858_040--Hb_001050_010 Hb_003858_040--Hb_000868_060 Hb_000002_490 Hb_000002_490 Hb_003858_040--Hb_000002_490 Hb_001396_280 Hb_001396_280 Hb_003858_040--Hb_001396_280 Hb_035318_010 Hb_035318_010 Hb_001910_020--Hb_035318_010 Hb_001910_020--Hb_000785_030 Hb_152453_010 Hb_152453_010 Hb_001910_020--Hb_152453_010 Hb_003091_010 Hb_003091_010 Hb_001910_020--Hb_003091_010 Hb_001882_040 Hb_001882_040 Hb_001910_020--Hb_001882_040 Hb_000261_520 Hb_000261_520 Hb_000375_030--Hb_000261_520 Hb_000640_220 Hb_000640_220 Hb_000375_030--Hb_000640_220 Hb_005895_040 Hb_005895_040 Hb_000375_030--Hb_005895_040 Hb_005408_020 Hb_005408_020 Hb_000375_030--Hb_005408_020 Hb_002477_130 Hb_002477_130 Hb_000375_030--Hb_002477_130 Hb_009151_020 Hb_009151_020 Hb_000375_030--Hb_009151_020 Hb_002320_070--Hb_005408_020 Hb_010925_020 Hb_010925_020 Hb_002320_070--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_002320_070--Hb_002307_350 Hb_003894_040 Hb_003894_040 Hb_002320_070--Hb_003894_040 Hb_009119_030 Hb_009119_030 Hb_002320_070--Hb_009119_030 Hb_030131_040 Hb_030131_040 Hb_001085_320--Hb_030131_040 Hb_001085_320--Hb_000868_060 Hb_000059_140 Hb_000059_140 Hb_001085_320--Hb_000059_140 Hb_015763_030 Hb_015763_030 Hb_001085_320--Hb_015763_030 Hb_007558_120 Hb_007558_120 Hb_001085_320--Hb_007558_120 Hb_001454_320 Hb_001454_320 Hb_001085_320--Hb_001454_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.5587 67.7666 53.7235 79.8101 120.86 116.697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.3069 24.5168 22.2761 33.1952 14.1632

CAGE analysis