Hb_000959_250

Information

Type -
Description -
Location Contig959: 220164-226477
Sequence    

Annotation

kegg
ID pvu:PHAVU_002G267900g
description hypothetical protein
nr
ID XP_012075285.1
description PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
swissprot
ID Q9SJ20
description Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1
trembl
ID A0A067KGF5
description Ribonucleoside-diphosphate reductase OS=Jatropha curcas GN=JCGZ_09455 PE=3 SV=1
Gene Ontology
ID GO:0004748
description ribonucleoside-diphosphate reductase large subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63662: 220128-226631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_250 0.0 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
2 Hb_003897_040 0.0862093807 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
3 Hb_000648_100 0.0897606302 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
4 Hb_000868_060 0.0971097974 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
5 Hb_001832_130 0.0973224198 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
6 Hb_003050_370 0.0993819088 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
7 Hb_002398_030 0.1010134494 - - amino acid binding protein, putative [Ricinus communis]
8 Hb_019654_040 0.101591733 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
9 Hb_003549_090 0.1029860809 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
10 Hb_001454_370 0.1035696189 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
11 Hb_000933_010 0.1040899171 - - -
12 Hb_001030_110 0.1045736789 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 isoform X1 [Jatropha curcas]
13 Hb_001143_180 0.1058214027 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
14 Hb_012023_020 0.1070602458 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
15 Hb_000445_050 0.1078954265 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
16 Hb_002888_070 0.1092849306 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
17 Hb_001085_320 0.1113628223 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
18 Hb_000617_100 0.1115130286 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
19 Hb_001454_320 0.1115373326 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
20 Hb_011930_080 0.111571178 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]

Gene co-expression network

sample Hb_000959_250 Hb_000959_250 Hb_003897_040 Hb_003897_040 Hb_000959_250--Hb_003897_040 Hb_000648_100 Hb_000648_100 Hb_000959_250--Hb_000648_100 Hb_000868_060 Hb_000868_060 Hb_000959_250--Hb_000868_060 Hb_001832_130 Hb_001832_130 Hb_000959_250--Hb_001832_130 Hb_003050_370 Hb_003050_370 Hb_000959_250--Hb_003050_370 Hb_002398_030 Hb_002398_030 Hb_000959_250--Hb_002398_030 Hb_000933_010 Hb_000933_010 Hb_003897_040--Hb_000933_010 Hb_005460_050 Hb_005460_050 Hb_003897_040--Hb_005460_050 Hb_003038_120 Hb_003038_120 Hb_003897_040--Hb_003038_120 Hb_003897_040--Hb_002398_030 Hb_000261_230 Hb_000261_230 Hb_003897_040--Hb_000261_230 Hb_032990_010 Hb_032990_010 Hb_003897_040--Hb_032990_010 Hb_000470_070 Hb_000470_070 Hb_000648_100--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_000648_100--Hb_002078_100 Hb_001454_320 Hb_001454_320 Hb_000648_100--Hb_001454_320 Hb_019654_040 Hb_019654_040 Hb_000648_100--Hb_019654_040 Hb_000923_080 Hb_000923_080 Hb_000648_100--Hb_000923_080 Hb_001140_350 Hb_001140_350 Hb_000648_100--Hb_001140_350 Hb_002888_070 Hb_002888_070 Hb_000868_060--Hb_002888_070 Hb_000395_020 Hb_000395_020 Hb_000868_060--Hb_000395_020 Hb_001050_010 Hb_001050_010 Hb_000868_060--Hb_001050_010 Hb_001102_080 Hb_001102_080 Hb_000868_060--Hb_001102_080 Hb_001085_320 Hb_001085_320 Hb_000868_060--Hb_001085_320 Hb_001040_040 Hb_001040_040 Hb_000868_060--Hb_001040_040 Hb_001301_220 Hb_001301_220 Hb_001832_130--Hb_001301_220 Hb_005965_030 Hb_005965_030 Hb_001832_130--Hb_005965_030 Hb_002374_320 Hb_002374_320 Hb_001832_130--Hb_002374_320 Hb_003125_070 Hb_003125_070 Hb_001832_130--Hb_003125_070 Hb_000960_050 Hb_000960_050 Hb_001832_130--Hb_000960_050 Hb_001143_180 Hb_001143_180 Hb_001832_130--Hb_001143_180 Hb_003050_370--Hb_001085_320 Hb_073973_160 Hb_073973_160 Hb_003050_370--Hb_073973_160 Hb_003050_370--Hb_000868_060 Hb_000785_030 Hb_000785_030 Hb_003050_370--Hb_000785_030 Hb_001894_030 Hb_001894_030 Hb_003050_370--Hb_001894_030 Hb_008120_030 Hb_008120_030 Hb_002398_030--Hb_008120_030 Hb_000445_050 Hb_000445_050 Hb_002398_030--Hb_000445_050 Hb_003549_090 Hb_003549_090 Hb_002398_030--Hb_003549_090 Hb_058999_030 Hb_058999_030 Hb_002398_030--Hb_058999_030 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_001635_160 Hb_001635_160 Hb_002398_030--Hb_001635_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8688 10.9163 15.4037 13.927 15.6507 20.0423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.7096 4.3854 7.03883 12.4265 3.30163

CAGE analysis