Hb_003125_070

Information

Type -
Description -
Location Contig3125: 37388-42741
Sequence    

Annotation

kegg
ID pop:POPTR_0015s10810g
description POPTRDRAFT_1101691; hypothetical protein
nr
ID XP_012079836.1
description PREDICTED: serine/threonine-protein kinase rio1-like [Jatropha curcas]
swissprot
ID Q922Q2
description Serine/threonine-protein kinase RIO1 OS=Mus musculus GN=Riok1 PE=2 SV=2
trembl
ID A0A067K467
description Serine/threonine-protein kinase RIO1 OS=Jatropha curcas GN=JCGZ_11293 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase rio1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33046: 37344-37712 , PASA_asmbl_33047: 42364-42676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_070 0.0 - - PREDICTED: serine/threonine-protein kinase rio1-like [Jatropha curcas]
2 Hb_001832_130 0.0800044409 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
3 Hb_001301_220 0.0804528795 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
4 Hb_000735_050 0.1015923693 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
5 Hb_003994_140 0.1017891011 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000563_330 0.1018707435 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_000679_340 0.1035870309 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
8 Hb_003680_230 0.1066316256 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
9 Hb_006452_160 0.1080517156 - - structural constituent of ribosome, putative [Ricinus communis]
10 Hb_002739_130 0.1087789913 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
11 Hb_000069_590 0.110539572 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
12 Hb_007432_070 0.110576912 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
13 Hb_001143_180 0.1110488059 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
14 Hb_005288_080 0.1114056653 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000525_100 0.1120141348 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
16 Hb_002045_150 0.1128797299 - - histone acetyltransferase gcn5, putative [Ricinus communis]
17 Hb_002157_260 0.1155245836 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
18 Hb_003096_060 0.1158146853 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
19 Hb_000230_430 0.1162703981 - - catalytic, putative [Ricinus communis]
20 Hb_001085_320 0.1170032734 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003125_070 Hb_003125_070 Hb_001832_130 Hb_001832_130 Hb_003125_070--Hb_001832_130 Hb_001301_220 Hb_001301_220 Hb_003125_070--Hb_001301_220 Hb_000735_050 Hb_000735_050 Hb_003125_070--Hb_000735_050 Hb_003994_140 Hb_003994_140 Hb_003125_070--Hb_003994_140 Hb_000563_330 Hb_000563_330 Hb_003125_070--Hb_000563_330 Hb_000679_340 Hb_000679_340 Hb_003125_070--Hb_000679_340 Hb_001832_130--Hb_001301_220 Hb_005965_030 Hb_005965_030 Hb_001832_130--Hb_005965_030 Hb_002374_320 Hb_002374_320 Hb_001832_130--Hb_002374_320 Hb_000960_050 Hb_000960_050 Hb_001832_130--Hb_000960_050 Hb_001143_180 Hb_001143_180 Hb_001832_130--Hb_001143_180 Hb_143629_150 Hb_143629_150 Hb_001301_220--Hb_143629_150 Hb_001077_030 Hb_001077_030 Hb_001301_220--Hb_001077_030 Hb_002042_030 Hb_002042_030 Hb_001301_220--Hb_002042_030 Hb_005053_010 Hb_005053_010 Hb_001301_220--Hb_005053_010 Hb_000718_070 Hb_000718_070 Hb_001301_220--Hb_000718_070 Hb_000069_590 Hb_000069_590 Hb_000735_050--Hb_000069_590 Hb_000735_050--Hb_003994_140 Hb_000735_050--Hb_000718_070 Hb_000186_330 Hb_000186_330 Hb_000735_050--Hb_000186_330 Hb_000336_110 Hb_000336_110 Hb_000735_050--Hb_000336_110 Hb_000735_050--Hb_001832_130 Hb_002928_010 Hb_002928_010 Hb_003994_140--Hb_002928_010 Hb_039605_010 Hb_039605_010 Hb_003994_140--Hb_039605_010 Hb_003994_140--Hb_000563_330 Hb_000525_100 Hb_000525_100 Hb_003994_140--Hb_000525_100 Hb_000983_120 Hb_000983_120 Hb_003994_140--Hb_000983_120 Hb_003994_140--Hb_002042_030 Hb_006452_160 Hb_006452_160 Hb_000563_330--Hb_006452_160 Hb_002739_130 Hb_002739_130 Hb_000563_330--Hb_002739_130 Hb_000563_330--Hb_039605_010 Hb_058551_010 Hb_058551_010 Hb_000563_330--Hb_058551_010 Hb_016734_090 Hb_016734_090 Hb_000563_330--Hb_016734_090 Hb_022256_060 Hb_022256_060 Hb_000679_340--Hb_022256_060 Hb_000230_090 Hb_000230_090 Hb_000679_340--Hb_000230_090 Hb_000679_340--Hb_005965_030 Hb_003633_070 Hb_003633_070 Hb_000679_340--Hb_003633_070 Hb_008887_020 Hb_008887_020 Hb_000679_340--Hb_008887_020 Hb_000922_020 Hb_000922_020 Hb_000679_340--Hb_000922_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.1754 7.31768 8.26505 4.06852 8.71123 8.84938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.26988 3.21954 0.945126 3.83884 2.61145

CAGE analysis