Hb_035318_010

Information

Type -
Description -
Location Contig35318: 7334-8551
Sequence    

Annotation

kegg
ID rcu:RCOM_0770010
description GTP binding protein, putative
nr
ID XP_012086197.1
description PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
swissprot
ID Q8L607
description Short integuments 2, mitochondrial OS=Arabidopsis thaliana GN=SIN2 PE=1 SV=1
trembl
ID B9T5C1
description GTP binding protein, putative OS=Ricinus communis GN=RCOM_0770010 PE=4 SV=1
Gene Ontology
ID GO:0009507
description mitochondrial ribosome-associated gtpase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36679: 7473-8669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035318_010 0.0 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
2 Hb_001910_020 0.0712206946 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
3 Hb_000787_170 0.0920178752 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
4 Hb_001882_040 0.0978368601 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
5 Hb_152453_010 0.10059761 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
6 Hb_000392_050 0.1081097542 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
7 Hb_000939_060 0.1083365753 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
8 Hb_000785_030 0.1108651002 - - hypothetical protein RCOM_0808030 [Ricinus communis]
9 Hb_004920_060 0.1109531252 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
10 Hb_000120_510 0.1127805505 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
11 Hb_001160_120 0.115864155 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001052_040 0.1169567929 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
13 Hb_011609_170 0.117374469 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
14 Hb_001474_030 0.1177509486 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
15 Hb_005846_020 0.1178000421 - - PREDICTED: tubulin-folding cofactor C [Jatropha curcas]
16 Hb_008725_130 0.1200541088 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
17 Hb_080147_040 0.1202841412 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
18 Hb_008246_030 0.1208954185 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
19 Hb_002411_180 0.1221625043 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
20 Hb_000336_270 0.1237130889 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_035318_010 Hb_035318_010 Hb_001910_020 Hb_001910_020 Hb_035318_010--Hb_001910_020 Hb_000787_170 Hb_000787_170 Hb_035318_010--Hb_000787_170 Hb_001882_040 Hb_001882_040 Hb_035318_010--Hb_001882_040 Hb_152453_010 Hb_152453_010 Hb_035318_010--Hb_152453_010 Hb_000392_050 Hb_000392_050 Hb_035318_010--Hb_000392_050 Hb_000939_060 Hb_000939_060 Hb_035318_010--Hb_000939_060 Hb_000785_030 Hb_000785_030 Hb_001910_020--Hb_000785_030 Hb_001910_020--Hb_152453_010 Hb_003091_010 Hb_003091_010 Hb_001910_020--Hb_003091_010 Hb_073973_160 Hb_073973_160 Hb_001910_020--Hb_073973_160 Hb_001910_020--Hb_001882_040 Hb_000787_170--Hb_000939_060 Hb_000394_190 Hb_000394_190 Hb_000787_170--Hb_000394_190 Hb_000261_250 Hb_000261_250 Hb_000787_170--Hb_000261_250 Hb_003467_010 Hb_003467_010 Hb_000787_170--Hb_003467_010 Hb_000140_330 Hb_000140_330 Hb_000787_170--Hb_000140_330 Hb_011609_170 Hb_011609_170 Hb_001882_040--Hb_011609_170 Hb_001163_120 Hb_001163_120 Hb_001882_040--Hb_001163_120 Hb_000031_280 Hb_000031_280 Hb_001882_040--Hb_000031_280 Hb_000336_270 Hb_000336_270 Hb_001882_040--Hb_000336_270 Hb_005846_020 Hb_005846_020 Hb_152453_010--Hb_005846_020 Hb_000976_080 Hb_000976_080 Hb_152453_010--Hb_000976_080 Hb_000345_530 Hb_000345_530 Hb_152453_010--Hb_000345_530 Hb_000617_220 Hb_000617_220 Hb_152453_010--Hb_000617_220 Hb_152453_010--Hb_000392_050 Hb_000392_050--Hb_000785_030 Hb_009222_010 Hb_009222_010 Hb_000392_050--Hb_009222_010 Hb_018790_070 Hb_018790_070 Hb_000392_050--Hb_018790_070 Hb_001102_080 Hb_001102_080 Hb_000392_050--Hb_001102_080 Hb_002942_050 Hb_002942_050 Hb_000392_050--Hb_002942_050 Hb_001142_050 Hb_001142_050 Hb_000392_050--Hb_001142_050 Hb_000939_060--Hb_000394_190 Hb_031091_010 Hb_031091_010 Hb_000939_060--Hb_031091_010 Hb_001946_300 Hb_001946_300 Hb_000939_060--Hb_001946_300 Hb_001771_120 Hb_001771_120 Hb_000939_060--Hb_001771_120 Hb_000939_060--Hb_000140_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.7218 20.0347 22.1951 14.5661 30.3177 41.3532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.86633 12.146 6.58337 9.14004 4.90945

CAGE analysis