Hb_000336_270

Information

Type transcription factor
Description TF Family: mTERF
Location Contig336: 350052-351197
Sequence    

Annotation

kegg
ID rcu:RCOM_2011050
description hypothetical protein
nr
ID XP_002535825.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TC56
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2011050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35188: 350360-350791
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_270 0.0 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
2 Hb_002000_060 0.0878181677 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
3 Hb_080147_040 0.0962126543 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
4 Hb_001882_040 0.1014156629 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
5 Hb_001163_120 0.1033474489 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000563_600 0.1104679317 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
7 Hb_009780_100 0.1117156161 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
8 Hb_000939_060 0.1119979615 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
9 Hb_005000_320 0.113499294 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
10 Hb_003680_230 0.1139568221 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
11 Hb_003086_190 0.1145682268 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
12 Hb_000125_200 0.1147334371 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
13 Hb_000599_080 0.1156586796 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
14 Hb_000787_170 0.1173287892 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
15 Hb_001269_200 0.117607877 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
16 Hb_002942_050 0.1194969586 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
17 Hb_007982_070 0.1201603124 - - PREDICTED: protein CPR-5 [Jatropha curcas]
18 Hb_011918_050 0.1201851432 - - -
19 Hb_000031_280 0.1220193736 - - -
20 Hb_005883_010 0.1224186583 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000336_270 Hb_000336_270 Hb_002000_060 Hb_002000_060 Hb_000336_270--Hb_002000_060 Hb_080147_040 Hb_080147_040 Hb_000336_270--Hb_080147_040 Hb_001882_040 Hb_001882_040 Hb_000336_270--Hb_001882_040 Hb_001163_120 Hb_001163_120 Hb_000336_270--Hb_001163_120 Hb_000563_600 Hb_000563_600 Hb_000336_270--Hb_000563_600 Hb_009780_100 Hb_009780_100 Hb_000336_270--Hb_009780_100 Hb_147505_010 Hb_147505_010 Hb_002000_060--Hb_147505_010 Hb_002000_060--Hb_000563_600 Hb_000139_230 Hb_000139_230 Hb_002000_060--Hb_000139_230 Hb_002000_060--Hb_001163_120 Hb_004374_080 Hb_004374_080 Hb_002000_060--Hb_004374_080 Hb_000300_360 Hb_000300_360 Hb_080147_040--Hb_000300_360 Hb_009620_030 Hb_009620_030 Hb_080147_040--Hb_009620_030 Hb_001953_150 Hb_001953_150 Hb_080147_040--Hb_001953_150 Hb_006452_160 Hb_006452_160 Hb_080147_040--Hb_006452_160 Hb_005188_060 Hb_005188_060 Hb_080147_040--Hb_005188_060 Hb_140049_020 Hb_140049_020 Hb_080147_040--Hb_140049_020 Hb_011609_170 Hb_011609_170 Hb_001882_040--Hb_011609_170 Hb_001910_020 Hb_001910_020 Hb_001882_040--Hb_001910_020 Hb_001882_040--Hb_001163_120 Hb_035318_010 Hb_035318_010 Hb_001882_040--Hb_035318_010 Hb_000031_280 Hb_000031_280 Hb_001882_040--Hb_000031_280 Hb_011310_130 Hb_011310_130 Hb_001163_120--Hb_011310_130 Hb_001163_120--Hb_000031_280 Hb_008556_030 Hb_008556_030 Hb_001163_120--Hb_008556_030 Hb_002942_050 Hb_002942_050 Hb_001163_120--Hb_002942_050 Hb_001163_120--Hb_011609_170 Hb_012404_070 Hb_012404_070 Hb_001163_120--Hb_012404_070 Hb_000599_080 Hb_000599_080 Hb_000563_600--Hb_000599_080 Hb_004631_190 Hb_004631_190 Hb_000563_600--Hb_004631_190 Hb_002311_070 Hb_002311_070 Hb_000563_600--Hb_002311_070 Hb_000922_020 Hb_000922_020 Hb_000563_600--Hb_000922_020 Hb_000002_490 Hb_000002_490 Hb_000563_600--Hb_000002_490 Hb_000718_070 Hb_000718_070 Hb_000563_600--Hb_000718_070 Hb_001243_060 Hb_001243_060 Hb_009780_100--Hb_001243_060 Hb_009771_100 Hb_009771_100 Hb_009780_100--Hb_009771_100 Hb_003633_070 Hb_003633_070 Hb_009780_100--Hb_003633_070 Hb_006615_120 Hb_006615_120 Hb_009780_100--Hb_006615_120 Hb_003117_020 Hb_003117_020 Hb_009780_100--Hb_003117_020 Hb_000230_430 Hb_000230_430 Hb_009780_100--Hb_000230_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1627 6.95744 4.87413 4.63614 4.83897 7.44265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.70139 2.22607 2.19069 1.89324 2.50623

CAGE analysis