Hb_002000_060

Information

Type -
Description -
Location Contig2000: 22913-31263
Sequence    

Annotation

kegg
ID cit:102621365
description uncharacterized LOC102621365
nr
ID XP_012073960.1
description PREDICTED: protein LIKE COV 2 [Jatropha curcas]
swissprot
ID Q9C8C1
description Protein LIKE COV 2 OS=Arabidopsis thaliana GN=LCV2 PE=2 SV=1
trembl
ID A0A067KWE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08357 PE=4 SV=1
Gene Ontology
ID GO:0005768
description protein like cov 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20244: 23072-31201
cDNA
(Sanger)
(ID:Location)		 023_F08r.ab1: 31114-32981

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002000_060 0.0 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
2 Hb_000336_270 0.0878181677 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
3 Hb_147505_010 0.094353272 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
4 Hb_000563_600 0.1016336934 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
5 Hb_000139_230 0.1043284075 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
6 Hb_001163_120 0.104969048 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_004374_080 0.1066735793 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
8 Hb_001900_120 0.1094782037 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
9 Hb_000879_160 0.1130368861 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
10 Hb_000661_020 0.1149386142 - - BnaC08g27190D [Brassica napus]
11 Hb_000031_280 0.1173155736 - - -
12 Hb_001882_040 0.1180707373 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
13 Hb_004631_190 0.1190342472 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
14 Hb_011609_170 0.1193184894 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
15 Hb_080147_040 0.1195214604 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
16 Hb_000025_650 0.1215177269 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
17 Hb_002081_120 0.1215465316 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
18 Hb_003858_040 0.1217186637 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
19 Hb_000599_080 0.1222293994 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
20 Hb_004629_010 0.1228190952 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]

Gene co-expression network

sample Hb_002000_060 Hb_002000_060 Hb_000336_270 Hb_000336_270 Hb_002000_060--Hb_000336_270 Hb_147505_010 Hb_147505_010 Hb_002000_060--Hb_147505_010 Hb_000563_600 Hb_000563_600 Hb_002000_060--Hb_000563_600 Hb_000139_230 Hb_000139_230 Hb_002000_060--Hb_000139_230 Hb_001163_120 Hb_001163_120 Hb_002000_060--Hb_001163_120 Hb_004374_080 Hb_004374_080 Hb_002000_060--Hb_004374_080 Hb_080147_040 Hb_080147_040 Hb_000336_270--Hb_080147_040 Hb_001882_040 Hb_001882_040 Hb_000336_270--Hb_001882_040 Hb_000336_270--Hb_001163_120 Hb_000336_270--Hb_000563_600 Hb_009780_100 Hb_009780_100 Hb_000336_270--Hb_009780_100 Hb_003929_140 Hb_003929_140 Hb_147505_010--Hb_003929_140 Hb_001638_300 Hb_001638_300 Hb_147505_010--Hb_001638_300 Hb_004629_010 Hb_004629_010 Hb_147505_010--Hb_004629_010 Hb_000661_020 Hb_000661_020 Hb_147505_010--Hb_000661_020 Hb_147505_010--Hb_000563_600 Hb_000028_510 Hb_000028_510 Hb_147505_010--Hb_000028_510 Hb_000599_080 Hb_000599_080 Hb_000563_600--Hb_000599_080 Hb_004631_190 Hb_004631_190 Hb_000563_600--Hb_004631_190 Hb_002311_070 Hb_002311_070 Hb_000563_600--Hb_002311_070 Hb_000922_020 Hb_000922_020 Hb_000563_600--Hb_000922_020 Hb_000002_490 Hb_000002_490 Hb_000563_600--Hb_000002_490 Hb_000718_070 Hb_000718_070 Hb_000563_600--Hb_000718_070 Hb_001021_220 Hb_001021_220 Hb_000139_230--Hb_001021_220 Hb_006787_060 Hb_006787_060 Hb_000139_230--Hb_006787_060 Hb_029904_020 Hb_029904_020 Hb_000139_230--Hb_029904_020 Hb_000935_090 Hb_000935_090 Hb_000139_230--Hb_000935_090 Hb_001377_110 Hb_001377_110 Hb_000139_230--Hb_001377_110 Hb_000879_160 Hb_000879_160 Hb_000139_230--Hb_000879_160 Hb_011310_130 Hb_011310_130 Hb_001163_120--Hb_011310_130 Hb_000031_280 Hb_000031_280 Hb_001163_120--Hb_000031_280 Hb_008556_030 Hb_008556_030 Hb_001163_120--Hb_008556_030 Hb_002942_050 Hb_002942_050 Hb_001163_120--Hb_002942_050 Hb_011609_170 Hb_011609_170 Hb_001163_120--Hb_011609_170 Hb_012404_070 Hb_012404_070 Hb_001163_120--Hb_012404_070 Hb_000270_160 Hb_000270_160 Hb_004374_080--Hb_000270_160 Hb_004374_080--Hb_000139_230 Hb_003872_010 Hb_003872_010 Hb_004374_080--Hb_003872_010 Hb_004374_080--Hb_012404_070 Hb_000566_100 Hb_000566_100 Hb_004374_080--Hb_000566_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.8174 15.1175 11.3471 14.4694 17.519 17.7011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.67558 4.00057 5.35141 5.70552 9.25147

CAGE analysis