Hb_001882_040

Information

Type -
Description -
Location Contig1882: 58729-65646
Sequence    

Annotation

kegg
ID pop:POPTR_0007s01700g
description POPTRDRAFT_718302; GLYOXALASE 2-1 family protein
nr
ID XP_012065212.1
description PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
swissprot
ID Q9SID3
description Hydroxyacylglutathione hydrolase 2, mitochondrial OS=Arabidopsis thaliana GN=At2g31350 PE=1 SV=1
trembl
ID A0A067L9H7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20898 PE=3 SV=1
Gene Ontology
ID GO:0004416
description probable hydroxyacylglutathione hydrolase chloroplast isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18579: 64429-65004 , PASA_asmbl_18581: 63344-63827 , PASA_asmbl_18582: 58841-65685 , PASA_asmbl_18583: 60886-61217 , PASA_asmbl_18584: 64016-64137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001882_040 0.0 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
2 Hb_011609_170 0.0879494128 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
3 Hb_001910_020 0.0947030865 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
4 Hb_001163_120 0.0969679587 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_035318_010 0.0978368601 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
6 Hb_000031_280 0.1012081776 - - -
7 Hb_000336_270 0.1014156629 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_003858_040 0.1067735104 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
9 Hb_001085_320 0.1114015117 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
10 Hb_008556_030 0.1116182268 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
11 Hb_002942_050 0.1131786798 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
12 Hb_008725_130 0.1134073246 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
13 Hb_001050_010 0.1143959884 - - Advillin [Gossypium arboreum]
14 Hb_073973_160 0.1164432889 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
15 Hb_000868_060 0.1165497773 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
16 Hb_001160_120 0.1165991004 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002681_170 0.11744588 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
18 Hb_002000_060 0.1180707373 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
19 Hb_012404_070 0.1182238259 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
20 Hb_001863_260 0.1186315868 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001882_040 Hb_001882_040 Hb_011609_170 Hb_011609_170 Hb_001882_040--Hb_011609_170 Hb_001910_020 Hb_001910_020 Hb_001882_040--Hb_001910_020 Hb_001163_120 Hb_001163_120 Hb_001882_040--Hb_001163_120 Hb_035318_010 Hb_035318_010 Hb_001882_040--Hb_035318_010 Hb_000031_280 Hb_000031_280 Hb_001882_040--Hb_000031_280 Hb_000336_270 Hb_000336_270 Hb_001882_040--Hb_000336_270 Hb_008725_130 Hb_008725_130 Hb_011609_170--Hb_008725_130 Hb_005408_020 Hb_005408_020 Hb_011609_170--Hb_005408_020 Hb_002942_050 Hb_002942_050 Hb_011609_170--Hb_002942_050 Hb_000868_060 Hb_000868_060 Hb_011609_170--Hb_000868_060 Hb_001050_010 Hb_001050_010 Hb_011609_170--Hb_001050_010 Hb_011609_170--Hb_001163_120 Hb_001910_020--Hb_035318_010 Hb_000785_030 Hb_000785_030 Hb_001910_020--Hb_000785_030 Hb_152453_010 Hb_152453_010 Hb_001910_020--Hb_152453_010 Hb_003091_010 Hb_003091_010 Hb_001910_020--Hb_003091_010 Hb_073973_160 Hb_073973_160 Hb_001910_020--Hb_073973_160 Hb_011310_130 Hb_011310_130 Hb_001163_120--Hb_011310_130 Hb_001163_120--Hb_000031_280 Hb_008556_030 Hb_008556_030 Hb_001163_120--Hb_008556_030 Hb_001163_120--Hb_002942_050 Hb_012404_070 Hb_012404_070 Hb_001163_120--Hb_012404_070 Hb_000787_170 Hb_000787_170 Hb_035318_010--Hb_000787_170 Hb_035318_010--Hb_152453_010 Hb_000392_050 Hb_000392_050 Hb_035318_010--Hb_000392_050 Hb_000939_060 Hb_000939_060 Hb_035318_010--Hb_000939_060 Hb_000031_280--Hb_008556_030 Hb_000599_080 Hb_000599_080 Hb_000031_280--Hb_000599_080 Hb_002681_170 Hb_002681_170 Hb_000031_280--Hb_002681_170 Hb_000031_290 Hb_000031_290 Hb_000031_280--Hb_000031_290 Hb_001418_040 Hb_001418_040 Hb_000031_280--Hb_001418_040 Hb_002000_060 Hb_002000_060 Hb_000336_270--Hb_002000_060 Hb_080147_040 Hb_080147_040 Hb_000336_270--Hb_080147_040 Hb_000336_270--Hb_001163_120 Hb_000563_600 Hb_000563_600 Hb_000336_270--Hb_000563_600 Hb_009780_100 Hb_009780_100 Hb_000336_270--Hb_009780_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
116.89 54.0332 74.2698 56.2434 76.794 108.864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.6066 18.1032 20.2622 24.4528 23.8011

CAGE analysis