Hb_000031_280

Information

Type -
Description -
Location Contig31: 221815-224358
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0036459
description ubiquitin carboxyl-terminal hydrolase 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32808: 223148-223446
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_280 0.0 - - -
2 Hb_008556_030 0.0740867563 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
3 Hb_001163_120 0.0745924842 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_000599_080 0.0780362881 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
5 Hb_002681_170 0.0818663794 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
6 Hb_000031_290 0.0868649994 - - hypothetical protein POPTR_0006s28540g [Populus trichocarpa]
7 Hb_001418_040 0.0902588612 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
8 Hb_000922_020 0.0930284902 - - protein binding protein, putative [Ricinus communis]
9 Hb_001396_280 0.0939665759 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
10 Hb_000243_160 0.095088826 - - glutaredoxin-1, grx1, putative [Ricinus communis]
11 Hb_003549_090 0.0958835392 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
12 Hb_029904_020 0.0961962794 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
13 Hb_011310_130 0.0981501866 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
14 Hb_000101_380 0.0988238357 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
15 Hb_002942_050 0.0990142743 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
16 Hb_028308_010 0.0993931191 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
17 Hb_000107_210 0.0995560776 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
18 Hb_001021_220 0.0998372028 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
19 Hb_001077_030 0.1002455241 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
20 Hb_000138_130 0.1008534107 - - hypothetical protein JCGZ_25540 [Jatropha curcas]

Gene co-expression network

sample Hb_000031_280 Hb_000031_280 Hb_008556_030 Hb_008556_030 Hb_000031_280--Hb_008556_030 Hb_001163_120 Hb_001163_120 Hb_000031_280--Hb_001163_120 Hb_000599_080 Hb_000599_080 Hb_000031_280--Hb_000599_080 Hb_002681_170 Hb_002681_170 Hb_000031_280--Hb_002681_170 Hb_000031_290 Hb_000031_290 Hb_000031_280--Hb_000031_290 Hb_001418_040 Hb_001418_040 Hb_000031_280--Hb_001418_040 Hb_002836_140 Hb_002836_140 Hb_008556_030--Hb_002836_140 Hb_008556_030--Hb_001418_040 Hb_000797_050 Hb_000797_050 Hb_008556_030--Hb_000797_050 Hb_002942_050 Hb_002942_050 Hb_008556_030--Hb_002942_050 Hb_002093_030 Hb_002093_030 Hb_008556_030--Hb_002093_030 Hb_011310_130 Hb_011310_130 Hb_001163_120--Hb_011310_130 Hb_001163_120--Hb_008556_030 Hb_001163_120--Hb_002942_050 Hb_011609_170 Hb_011609_170 Hb_001163_120--Hb_011609_170 Hb_012404_070 Hb_012404_070 Hb_001163_120--Hb_012404_070 Hb_000042_340 Hb_000042_340 Hb_000599_080--Hb_000042_340 Hb_000563_600 Hb_000563_600 Hb_000599_080--Hb_000563_600 Hb_000922_020 Hb_000922_020 Hb_000599_080--Hb_000922_020 Hb_000525_100 Hb_000525_100 Hb_000599_080--Hb_000525_100 Hb_032202_080 Hb_032202_080 Hb_000599_080--Hb_032202_080 Hb_002249_120 Hb_002249_120 Hb_002681_170--Hb_002249_120 Hb_002092_100 Hb_002092_100 Hb_002681_170--Hb_002092_100 Hb_002681_170--Hb_008556_030 Hb_002805_060 Hb_002805_060 Hb_002681_170--Hb_002805_060 Hb_000809_210 Hb_000809_210 Hb_002681_170--Hb_000809_210 Hb_000025_650 Hb_000025_650 Hb_000031_290--Hb_000025_650 Hb_001085_320 Hb_001085_320 Hb_000031_290--Hb_001085_320 Hb_002477_130 Hb_002477_130 Hb_000031_290--Hb_002477_130 Hb_002749_110 Hb_002749_110 Hb_000031_290--Hb_002749_110 Hb_000031_290--Hb_002093_030 Hb_006960_050 Hb_006960_050 Hb_001418_040--Hb_006960_050 Hb_000576_050 Hb_000576_050 Hb_001418_040--Hb_000576_050 Hb_000101_380 Hb_000101_380 Hb_001418_040--Hb_000101_380 Hb_000414_050 Hb_000414_050 Hb_001418_040--Hb_000414_050 Hb_001418_040--Hb_002836_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.92517 5.50045 7.77663 6.49735 8.05205 9.64541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.56801 2.96968 2.23642 2.54669 5.04854

CAGE analysis