Hb_000809_210

Information

Type -
Description -
Location Contig809: 158977-166642
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11320g
description POPTRDRAFT_802863; hypothetical protein
nr
ID XP_012079194.1
description PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
swissprot
ID Q9SCS2
description CDPK-related kinase 5 OS=Arabidopsis thaliana GN=CRK5 PE=2 SV=1
trembl
ID A0A067KJ88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12360 PE=4 SV=1
Gene Ontology
ID GO:0004672
description cdpk-related kinase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59158: 159019-159222 , PASA_asmbl_59159: 159245-161332 , PASA_asmbl_59160: 162217-162610 , PASA_asmbl_59161: 162755-165040 , PASA_asmbl_59163: 165119-166637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000809_210 0.0 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
2 Hb_002681_170 0.0929001266 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
3 Hb_011915_010 0.0957800412 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
4 Hb_000031_290 0.0960136344 - - hypothetical protein POPTR_0006s28540g [Populus trichocarpa]
5 Hb_000265_220 0.0983732038 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
6 Hb_002093_030 0.1018481198 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
7 Hb_002092_100 0.1022370497 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
8 Hb_006824_060 0.1106409284 - - PREDICTED: uncharacterized protein LOC105650737 [Jatropha curcas]
9 Hb_000735_100 0.1146016041 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
10 Hb_028872_120 0.1155246799 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
11 Hb_002307_350 0.1159268686 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
12 Hb_000156_160 0.1166323194 - - PREDICTED: urease accessory protein G [Jatropha curcas]
13 Hb_002896_060 0.1172701398 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
14 Hb_005892_030 0.1189714739 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
15 Hb_001652_080 0.1208251506 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
16 Hb_001040_040 0.1208488379 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
17 Hb_005408_020 0.1209247181 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007943_120 0.1224126552 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
19 Hb_000031_280 0.123024915 - - -
20 Hb_000025_650 0.12327064 - - exosome complex exonuclease rrp45, putative [Ricinus communis]

Gene co-expression network

sample Hb_000809_210 Hb_000809_210 Hb_002681_170 Hb_002681_170 Hb_000809_210--Hb_002681_170 Hb_011915_010 Hb_011915_010 Hb_000809_210--Hb_011915_010 Hb_000031_290 Hb_000031_290 Hb_000809_210--Hb_000031_290 Hb_000265_220 Hb_000265_220 Hb_000809_210--Hb_000265_220 Hb_002093_030 Hb_002093_030 Hb_000809_210--Hb_002093_030 Hb_002092_100 Hb_002092_100 Hb_000809_210--Hb_002092_100 Hb_002249_120 Hb_002249_120 Hb_002681_170--Hb_002249_120 Hb_000031_280 Hb_000031_280 Hb_002681_170--Hb_000031_280 Hb_002681_170--Hb_002092_100 Hb_008556_030 Hb_008556_030 Hb_002681_170--Hb_008556_030 Hb_002805_060 Hb_002805_060 Hb_002681_170--Hb_002805_060 Hb_001040_040 Hb_001040_040 Hb_011915_010--Hb_001040_040 Hb_001050_010 Hb_001050_010 Hb_011915_010--Hb_001050_010 Hb_002249_160 Hb_002249_160 Hb_011915_010--Hb_002249_160 Hb_011609_170 Hb_011609_170 Hb_011915_010--Hb_011609_170 Hb_007044_040 Hb_007044_040 Hb_011915_010--Hb_007044_040 Hb_001198_150 Hb_001198_150 Hb_011915_010--Hb_001198_150 Hb_000025_650 Hb_000025_650 Hb_000031_290--Hb_000025_650 Hb_001085_320 Hb_001085_320 Hb_000031_290--Hb_001085_320 Hb_002477_130 Hb_002477_130 Hb_000031_290--Hb_002477_130 Hb_000031_290--Hb_000031_280 Hb_002749_110 Hb_002749_110 Hb_000031_290--Hb_002749_110 Hb_000031_290--Hb_002093_030 Hb_002896_060 Hb_002896_060 Hb_000265_220--Hb_002896_060 Hb_027380_030 Hb_027380_030 Hb_000265_220--Hb_027380_030 Hb_000265_220--Hb_011915_010 Hb_000453_140 Hb_000453_140 Hb_000265_220--Hb_000453_140 Hb_000265_220--Hb_002681_170 Hb_002093_030--Hb_002749_110 Hb_003126_100 Hb_003126_100 Hb_002093_030--Hb_003126_100 Hb_022693_030 Hb_022693_030 Hb_002093_030--Hb_022693_030 Hb_000152_260 Hb_000152_260 Hb_002093_030--Hb_000152_260 Hb_002093_030--Hb_008556_030 Hb_001828_160 Hb_001828_160 Hb_002093_030--Hb_001828_160 Hb_000156_160 Hb_000156_160 Hb_002092_100--Hb_000156_160 Hb_005053_010 Hb_005053_010 Hb_002092_100--Hb_005053_010 Hb_002092_100--Hb_002805_060 Hb_002092_100--Hb_027380_030 Hb_016734_090 Hb_016734_090 Hb_002092_100--Hb_016734_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.6775 15.1959 24.7491 9.82115 37.8108 25.2424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6353 5.77242 4.8395 7.44075 15.1778

CAGE analysis