Hb_000265_220

Information

Type -
Description -
Location Contig265: 247369-251814
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17120g
description POPTRDRAFT_899233; hypothetical protein
nr
ID XP_012084114.1
description PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
swissprot
ID F4JRF4
description A/G-specific adenine DNA glycosylase OS=Arabidopsis thaliana GN=MYH PE=3 SV=1
trembl
ID A0A067LD77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15038 PE=4 SV=1
Gene Ontology
ID GO:0003677
description a g-specific adenine dna glycosylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27709: 248185-250319 , PASA_asmbl_27710: 251391-251776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000265_220 0.0 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
2 Hb_000809_210 0.0983732038 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
3 Hb_002896_060 0.0996955025 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
4 Hb_027380_030 0.1003115716 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
5 Hb_011915_010 0.1032293021 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
6 Hb_000453_140 0.1056765835 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
7 Hb_002681_170 0.1145659256 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
8 Hb_027402_090 0.1162690118 - - endonuclease, putative [Ricinus communis]
9 Hb_005408_020 0.1186945668 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002092_100 0.120078224 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
11 Hb_007456_010 0.121111134 - - hypothetical protein L484_003540 [Morus notabilis]
12 Hb_002805_060 0.1230945529 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
13 Hb_006915_020 0.1236972771 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
14 Hb_098315_070 0.1268048707 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105636030 isoform X1 [Jatropha curcas]
15 Hb_001040_040 0.1273083143 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
16 Hb_002307_350 0.1274549056 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
17 Hb_002249_160 0.1292779383 - - -
18 Hb_004376_030 0.1321472705 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
19 Hb_001051_090 0.1323891609 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
20 Hb_002947_040 0.1326198244 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000265_220 Hb_000265_220 Hb_000809_210 Hb_000809_210 Hb_000265_220--Hb_000809_210 Hb_002896_060 Hb_002896_060 Hb_000265_220--Hb_002896_060 Hb_027380_030 Hb_027380_030 Hb_000265_220--Hb_027380_030 Hb_011915_010 Hb_011915_010 Hb_000265_220--Hb_011915_010 Hb_000453_140 Hb_000453_140 Hb_000265_220--Hb_000453_140 Hb_002681_170 Hb_002681_170 Hb_000265_220--Hb_002681_170 Hb_000809_210--Hb_002681_170 Hb_000809_210--Hb_011915_010 Hb_000031_290 Hb_000031_290 Hb_000809_210--Hb_000031_290 Hb_002093_030 Hb_002093_030 Hb_000809_210--Hb_002093_030 Hb_002092_100 Hb_002092_100 Hb_000809_210--Hb_002092_100 Hb_001051_090 Hb_001051_090 Hb_002896_060--Hb_001051_090 Hb_002896_060--Hb_027380_030 Hb_002896_060--Hb_002092_100 Hb_002896_060--Hb_000453_140 Hb_001952_120 Hb_001952_120 Hb_002896_060--Hb_001952_120 Hb_002805_060 Hb_002805_060 Hb_002896_060--Hb_002805_060 Hb_027380_030--Hb_002805_060 Hb_000599_170 Hb_000599_170 Hb_027380_030--Hb_000599_170 Hb_027380_030--Hb_001051_090 Hb_027380_030--Hb_000453_140 Hb_006915_020 Hb_006915_020 Hb_027380_030--Hb_006915_020 Hb_001040_040 Hb_001040_040 Hb_011915_010--Hb_001040_040 Hb_001050_010 Hb_001050_010 Hb_011915_010--Hb_001050_010 Hb_002249_160 Hb_002249_160 Hb_011915_010--Hb_002249_160 Hb_011609_170 Hb_011609_170 Hb_011915_010--Hb_011609_170 Hb_007044_040 Hb_007044_040 Hb_011915_010--Hb_007044_040 Hb_001198_150 Hb_001198_150 Hb_011915_010--Hb_001198_150 Hb_003097_080 Hb_003097_080 Hb_000453_140--Hb_003097_080 Hb_000453_140--Hb_002092_100 Hb_000076_260 Hb_000076_260 Hb_000453_140--Hb_000076_260 Hb_007456_010 Hb_007456_010 Hb_000453_140--Hb_007456_010 Hb_002249_120 Hb_002249_120 Hb_002681_170--Hb_002249_120 Hb_000031_280 Hb_000031_280 Hb_002681_170--Hb_000031_280 Hb_002681_170--Hb_002092_100 Hb_008556_030 Hb_008556_030 Hb_002681_170--Hb_008556_030 Hb_002681_170--Hb_002805_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0802 5.14404 10.9176 5.35558 18.187 8.63132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.74901 2.32764 1.35024 3.46492 3.35239

CAGE analysis