Hb_022693_030

Information

Type -
Description -
Location Contig22693: 53879-63611
Sequence    

Annotation

kegg
ID rcu:RCOM_1450080
description cellular nucleic acid binding protein, putative
nr
ID XP_012084449.1
description PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
swissprot
ID Q04832
description DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1
trembl
ID A0A067K5W8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19650 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23545: 53881-63568 , PASA_asmbl_23547: 61310-61630 , PASA_asmbl_23550: 58897-59003 , PASA_asmbl_23552: 57507-57608 , PASA_asmbl_23553: 53881-63568
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022693_030 0.0 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
2 Hb_002093_030 0.069637709 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
3 Hb_002301_270 0.0785183555 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
4 Hb_009151_020 0.0792220503 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
5 Hb_002749_110 0.0815106013 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
6 Hb_005892_030 0.0836876763 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
7 Hb_000347_570 0.0836963873 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
8 Hb_000329_130 0.0843157926 - - beta-tubulin cofactor d, putative [Ricinus communis]
9 Hb_028872_120 0.0845886845 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
10 Hb_000152_260 0.0845941081 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
11 Hb_002942_050 0.0870936302 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
12 Hb_003126_100 0.090001273 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
13 Hb_017895_020 0.090234597 - - Vacuolar protein sorting protein, putative [Ricinus communis]
14 Hb_000914_080 0.0905560583 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_020665_030 0.0906250603 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001163_120 0.0909065721 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_001178_150 0.0911017485 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
18 Hb_012098_110 0.0930014274 - - Ribonuclease 3 [Gossypium arboreum]
19 Hb_021422_010 0.0947471137 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
20 Hb_006452_160 0.095653468 - - structural constituent of ribosome, putative [Ricinus communis]

Gene co-expression network

sample Hb_022693_030 Hb_022693_030 Hb_002093_030 Hb_002093_030 Hb_022693_030--Hb_002093_030 Hb_002301_270 Hb_002301_270 Hb_022693_030--Hb_002301_270 Hb_009151_020 Hb_009151_020 Hb_022693_030--Hb_009151_020 Hb_002749_110 Hb_002749_110 Hb_022693_030--Hb_002749_110 Hb_005892_030 Hb_005892_030 Hb_022693_030--Hb_005892_030 Hb_000347_570 Hb_000347_570 Hb_022693_030--Hb_000347_570 Hb_002093_030--Hb_002749_110 Hb_003126_100 Hb_003126_100 Hb_002093_030--Hb_003126_100 Hb_000152_260 Hb_000152_260 Hb_002093_030--Hb_000152_260 Hb_008556_030 Hb_008556_030 Hb_002093_030--Hb_008556_030 Hb_001828_160 Hb_001828_160 Hb_002093_030--Hb_001828_160 Hb_028872_120 Hb_028872_120 Hb_002301_270--Hb_028872_120 Hb_002301_270--Hb_009151_020 Hb_002301_270--Hb_000347_570 Hb_001178_150 Hb_001178_150 Hb_002301_270--Hb_001178_150 Hb_007943_120 Hb_007943_120 Hb_002301_270--Hb_007943_120 Hb_009151_020--Hb_000347_570 Hb_020665_030 Hb_020665_030 Hb_009151_020--Hb_020665_030 Hb_000329_130 Hb_000329_130 Hb_009151_020--Hb_000329_130 Hb_009151_020--Hb_001178_150 Hb_001473_090 Hb_001473_090 Hb_009151_020--Hb_001473_090 Hb_000914_080 Hb_000914_080 Hb_009151_020--Hb_000914_080 Hb_002749_110--Hb_000152_260 Hb_002749_110--Hb_001473_090 Hb_001599_030 Hb_001599_030 Hb_002749_110--Hb_001599_030 Hb_000107_400 Hb_000107_400 Hb_002749_110--Hb_000107_400 Hb_002749_110--Hb_003126_100 Hb_000714_050 Hb_000714_050 Hb_005892_030--Hb_000714_050 Hb_005892_030--Hb_000329_130 Hb_007558_120 Hb_007558_120 Hb_005892_030--Hb_007558_120 Hb_000059_140 Hb_000059_140 Hb_005892_030--Hb_000059_140 Hb_010381_060 Hb_010381_060 Hb_005892_030--Hb_010381_060 Hb_005892_030--Hb_002749_110 Hb_000347_570--Hb_001178_150 Hb_000347_570--Hb_001473_090 Hb_000347_570--Hb_020665_030 Hb_000025_650 Hb_000025_650 Hb_000347_570--Hb_000025_650 Hb_001417_050 Hb_001417_050 Hb_000347_570--Hb_001417_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.848 40.9812 50.0132 22.4136 77.4016 90.0652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.8638 31.8977 19.222 26.8932 36.0691

CAGE analysis