Hb_000563_600

Information

Type -
Description -
Location Contig563: 451851-452809
Sequence    

Annotation

kegg
ID egr:104428079
description uncharacterized LOC104428079
nr
ID XP_010039376.1
description PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID J7G2Z7
description Non-ltr retroelement reverse transcriptase OS=Rosa rugosa PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48946: 452716-452938
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_600 0.0 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
2 Hb_000599_080 0.0762021898 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
3 Hb_004631_190 0.0782799843 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
4 Hb_002311_070 0.0860361099 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
5 Hb_000922_020 0.0869314994 - - protein binding protein, putative [Ricinus communis]
6 Hb_000002_490 0.0878546132 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
7 Hb_000718_070 0.0881519606 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001817_150 0.0891823409 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
9 Hb_147505_010 0.0902325759 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
10 Hb_000309_040 0.0922965048 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
11 Hb_001077_030 0.0932096116 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
12 Hb_003680_230 0.0932769981 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
13 Hb_000260_440 0.0938754587 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
14 Hb_032264_060 0.0956632566 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
15 Hb_000777_050 0.0961230599 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
16 Hb_000162_030 0.0975345581 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
17 Hb_057878_010 0.0975701441 - - hypothetical protein VITISV_036304 [Vitis vinifera]
18 Hb_007765_080 0.0978130663 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
19 Hb_116349_030 0.0998473875 - - PREDICTED: zinc finger MYND domain-containing protein 15 isoform X3 [Jatropha curcas]
20 Hb_000661_020 0.0999208072 - - BnaC08g27190D [Brassica napus]

Gene co-expression network

sample Hb_000563_600 Hb_000563_600 Hb_000599_080 Hb_000599_080 Hb_000563_600--Hb_000599_080 Hb_004631_190 Hb_004631_190 Hb_000563_600--Hb_004631_190 Hb_002311_070 Hb_002311_070 Hb_000563_600--Hb_002311_070 Hb_000922_020 Hb_000922_020 Hb_000563_600--Hb_000922_020 Hb_000002_490 Hb_000002_490 Hb_000563_600--Hb_000002_490 Hb_000718_070 Hb_000718_070 Hb_000563_600--Hb_000718_070 Hb_000042_340 Hb_000042_340 Hb_000599_080--Hb_000042_340 Hb_000599_080--Hb_000922_020 Hb_000031_280 Hb_000031_280 Hb_000599_080--Hb_000031_280 Hb_000525_100 Hb_000525_100 Hb_000599_080--Hb_000525_100 Hb_032202_080 Hb_032202_080 Hb_000599_080--Hb_032202_080 Hb_001405_190 Hb_001405_190 Hb_004631_190--Hb_001405_190 Hb_009112_010 Hb_009112_010 Hb_004631_190--Hb_009112_010 Hb_000230_430 Hb_000230_430 Hb_004631_190--Hb_000230_430 Hb_001140_030 Hb_001140_030 Hb_004631_190--Hb_001140_030 Hb_004631_190--Hb_000718_070 Hb_000661_020 Hb_000661_020 Hb_004631_190--Hb_000661_020 Hb_002311_070--Hb_000718_070 Hb_001077_030 Hb_001077_030 Hb_002311_070--Hb_001077_030 Hb_000576_020 Hb_000576_020 Hb_002311_070--Hb_000576_020 Hb_002311_070--Hb_000002_490 Hb_004631_180 Hb_004631_180 Hb_002311_070--Hb_004631_180 Hb_000309_040 Hb_000309_040 Hb_002311_070--Hb_000309_040 Hb_000922_020--Hb_001405_190 Hb_005288_080 Hb_005288_080 Hb_000922_020--Hb_005288_080 Hb_000679_340 Hb_000679_340 Hb_000922_020--Hb_000679_340 Hb_022256_060 Hb_022256_060 Hb_000922_020--Hb_022256_060 Hb_000922_020--Hb_032202_080 Hb_000922_020--Hb_001077_030 Hb_003126_100 Hb_003126_100 Hb_000002_490--Hb_003126_100 Hb_001050_010 Hb_001050_010 Hb_000002_490--Hb_001050_010 Hb_000933_020 Hb_000933_020 Hb_000002_490--Hb_000933_020 Hb_000002_490--Hb_000718_070 Hb_011618_080 Hb_011618_080 Hb_000002_490--Hb_011618_080 Hb_000718_070--Hb_001077_030 Hb_003124_220 Hb_003124_220 Hb_000718_070--Hb_003124_220 Hb_003680_230 Hb_003680_230 Hb_000718_070--Hb_003680_230 Hb_000718_070--Hb_001140_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.60735 2.34567 2.36902 2.04041 2.86101 2.03077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1058 1.00009 1.51338 0.96345 1.32734

CAGE analysis