Hb_012404_070

Information

Type -
Description -
Location Contig12404: 107391-111267
Sequence    

Annotation

kegg
ID rcu:RCOM_0023050
description hydrolase, putative
nr
ID XP_012066452.1
description PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
swissprot
ID Q2PCF1
description Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1
trembl
ID B9T793
description Hydrolase, putative OS=Ricinus communis GN=RCOM_0023050 PE=4 SV=1
Gene Ontology
ID GO:0016787
description calcineurin-like phosphoesterase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07311: 109578-111690 , PASA_asmbl_07313: 103510-111672 , PASA_asmbl_07314: 103510-111660 , PASA_asmbl_07315: 112197-113216
cDNA
(Sanger)
(ID:Location)		 015_G17.ab1: 110206-111652

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012404_070 0.0 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
2 Hb_003436_050 0.0811384084 - - arf gtpase-activating protein, putative [Ricinus communis]
3 Hb_001163_120 0.0871776125 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_005408_020 0.104185281 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008246_030 0.1050346707 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
6 Hb_002249_120 0.1117695309 - - RNA-binding protein, putative [Ricinus communis]
7 Hb_011609_170 0.1128862583 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
8 Hb_008725_130 0.114583039 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
9 Hb_002159_040 0.1173833827 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
10 Hb_010925_020 0.1178759338 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
11 Hb_001473_090 0.1179266706 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
12 Hb_001882_040 0.1182238259 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
13 Hb_000029_320 0.1199450601 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
14 Hb_002681_170 0.1205392307 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
15 Hb_000566_100 0.1208355201 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
16 Hb_002066_080 0.1211803151 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
17 Hb_000363_380 0.1212203278 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
18 Hb_002320_070 0.1214097116 - - conserved hypothetical protein [Ricinus communis]
19 Hb_022693_030 0.1214943776 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
20 Hb_003847_120 0.1222589709 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_012404_070 Hb_012404_070 Hb_003436_050 Hb_003436_050 Hb_012404_070--Hb_003436_050 Hb_001163_120 Hb_001163_120 Hb_012404_070--Hb_001163_120 Hb_005408_020 Hb_005408_020 Hb_012404_070--Hb_005408_020 Hb_008246_030 Hb_008246_030 Hb_012404_070--Hb_008246_030 Hb_002249_120 Hb_002249_120 Hb_012404_070--Hb_002249_120 Hb_011609_170 Hb_011609_170 Hb_012404_070--Hb_011609_170 Hb_000029_320 Hb_000029_320 Hb_003436_050--Hb_000029_320 Hb_003029_130 Hb_003029_130 Hb_003436_050--Hb_003029_130 Hb_003436_050--Hb_002249_120 Hb_017895_020 Hb_017895_020 Hb_003436_050--Hb_017895_020 Hb_001473_090 Hb_001473_090 Hb_003436_050--Hb_001473_090 Hb_011310_130 Hb_011310_130 Hb_001163_120--Hb_011310_130 Hb_000031_280 Hb_000031_280 Hb_001163_120--Hb_000031_280 Hb_008556_030 Hb_008556_030 Hb_001163_120--Hb_008556_030 Hb_002942_050 Hb_002942_050 Hb_001163_120--Hb_002942_050 Hb_001163_120--Hb_011609_170 Hb_002307_350 Hb_002307_350 Hb_005408_020--Hb_002307_350 Hb_005408_020--Hb_011609_170 Hb_000914_080 Hb_000914_080 Hb_005408_020--Hb_000914_080 Hb_008725_130 Hb_008725_130 Hb_005408_020--Hb_008725_130 Hb_009151_020 Hb_009151_020 Hb_005408_020--Hb_009151_020 Hb_030827_030 Hb_030827_030 Hb_005408_020--Hb_030827_030 Hb_000363_380 Hb_000363_380 Hb_008246_030--Hb_000363_380 Hb_004920_060 Hb_004920_060 Hb_008246_030--Hb_004920_060 Hb_002612_010 Hb_002612_010 Hb_008246_030--Hb_002612_010 Hb_002301_270 Hb_002301_270 Hb_008246_030--Hb_002301_270 Hb_008246_030--Hb_017895_020 Hb_002681_170 Hb_002681_170 Hb_002249_120--Hb_002681_170 Hb_002249_120--Hb_002307_350 Hb_002249_120--Hb_017895_020 Hb_002249_120--Hb_005408_020 Hb_001900_120 Hb_001900_120 Hb_002249_120--Hb_001900_120 Hb_011609_170--Hb_008725_130 Hb_011609_170--Hb_002942_050 Hb_000868_060 Hb_000868_060 Hb_011609_170--Hb_000868_060 Hb_001050_010 Hb_001050_010 Hb_011609_170--Hb_001050_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0961 11.0525 12.202 10.4884 19.14 29.543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.51522 4.30546 5.92834 3.5421 8.3897

CAGE analysis