Hb_003436_050

Information

Type -
Description -
Location Contig3436: 98253-103137
Sequence    

Annotation

kegg
ID rcu:RCOM_1249540
description arf gtpase-activating protein, putative
nr
ID XP_002527750.1
description arf gtpase-activating protein, putative [Ricinus communis]
swissprot
ID Q9M354
description Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1
trembl
ID B9SP31
description Arf gtpase-activating protein, putative OS=Ricinus communis GN=RCOM_1249540 PE=4 SV=1
Gene Ontology
ID GO:0005096
description probable adp-ribosylation factor gtpase-activating protein agd6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35904: 98213-103403
cDNA
(Sanger)
(ID:Location)		 014_P09.ab1: 102683-103403 , 028_A21.ab1: 102755-103403

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003436_050 0.0 - - arf gtpase-activating protein, putative [Ricinus communis]
2 Hb_000029_320 0.0790217964 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
3 Hb_012404_070 0.0811384084 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
4 Hb_003029_130 0.0861720842 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
5 Hb_002249_120 0.0897529439 - - RNA-binding protein, putative [Ricinus communis]
6 Hb_017895_020 0.0925965101 - - Vacuolar protein sorting protein, putative [Ricinus communis]
7 Hb_001473_090 0.094372167 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
8 Hb_000475_020 0.0951283166 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
9 Hb_004920_060 0.0952981803 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
10 Hb_001196_060 0.0957215548 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
11 Hb_003847_120 0.0987906846 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_002159_040 0.0989576642 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
13 Hb_022250_110 0.1005269138 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
14 Hb_008725_130 0.1009636799 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
15 Hb_078477_040 0.1016891236 - - nuclear movement protein nudc, putative [Ricinus communis]
16 Hb_005408_020 0.1027239746 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000209_070 0.1030923263 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
18 Hb_000347_570 0.1033072174 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
19 Hb_002307_350 0.1037346428 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
20 Hb_002066_080 0.104124213 - - PREDICTED: protein CYPRO4 [Jatropha curcas]

Gene co-expression network

sample Hb_003436_050 Hb_003436_050 Hb_000029_320 Hb_000029_320 Hb_003436_050--Hb_000029_320 Hb_012404_070 Hb_012404_070 Hb_003436_050--Hb_012404_070 Hb_003029_130 Hb_003029_130 Hb_003436_050--Hb_003029_130 Hb_002249_120 Hb_002249_120 Hb_003436_050--Hb_002249_120 Hb_017895_020 Hb_017895_020 Hb_003436_050--Hb_017895_020 Hb_001473_090 Hb_001473_090 Hb_003436_050--Hb_001473_090 Hb_002070_070 Hb_002070_070 Hb_000029_320--Hb_002070_070 Hb_015763_030 Hb_015763_030 Hb_000029_320--Hb_015763_030 Hb_000209_070 Hb_000209_070 Hb_000029_320--Hb_000209_070 Hb_022250_110 Hb_022250_110 Hb_000029_320--Hb_022250_110 Hb_000029_320--Hb_001473_090 Hb_000329_490 Hb_000329_490 Hb_000029_320--Hb_000329_490 Hb_001163_120 Hb_001163_120 Hb_012404_070--Hb_001163_120 Hb_005408_020 Hb_005408_020 Hb_012404_070--Hb_005408_020 Hb_008246_030 Hb_008246_030 Hb_012404_070--Hb_008246_030 Hb_012404_070--Hb_002249_120 Hb_011609_170 Hb_011609_170 Hb_012404_070--Hb_011609_170 Hb_000487_220 Hb_000487_220 Hb_003029_130--Hb_000487_220 Hb_015099_010 Hb_015099_010 Hb_003029_130--Hb_015099_010 Hb_003029_130--Hb_001473_090 Hb_000935_090 Hb_000935_090 Hb_003029_130--Hb_000935_090 Hb_001178_150 Hb_001178_150 Hb_003029_130--Hb_001178_150 Hb_010925_020 Hb_010925_020 Hb_003029_130--Hb_010925_020 Hb_002681_170 Hb_002681_170 Hb_002249_120--Hb_002681_170 Hb_002307_350 Hb_002307_350 Hb_002249_120--Hb_002307_350 Hb_002249_120--Hb_017895_020 Hb_002249_120--Hb_005408_020 Hb_001900_120 Hb_001900_120 Hb_002249_120--Hb_001900_120 Hb_002675_040 Hb_002675_040 Hb_017895_020--Hb_002675_040 Hb_000329_130 Hb_000329_130 Hb_017895_020--Hb_000329_130 Hb_017895_020--Hb_001900_120 Hb_008725_130 Hb_008725_130 Hb_017895_020--Hb_008725_130 Hb_028872_120 Hb_028872_120 Hb_017895_020--Hb_028872_120 Hb_000914_080 Hb_000914_080 Hb_017895_020--Hb_000914_080 Hb_001473_090--Hb_000209_070 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_001473_090--Hb_001178_150 Hb_000347_570 Hb_000347_570 Hb_001473_090--Hb_000347_570 Hb_009151_020 Hb_009151_020 Hb_001473_090--Hb_009151_020 Hb_000785_040 Hb_000785_040 Hb_001473_090--Hb_000785_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
114.281 59.3894 41.0313 53.2536 125.293 146.801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.3368 18.9529 31.1676 32.3492 46.1608

CAGE analysis