Hb_000363_380

Information

Type transcription factor
Description TF Family: PHD
Location Contig363: 334270-340722
Sequence    

Annotation

kegg
ID rcu:RCOM_0546900
description hypothetical protein
nr
ID XP_012070920.1
description PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
swissprot
ID Q5PNS0
description PHD finger protein At3g20280 OS=Arabidopsis thaliana GN=At3g20280 PE=2 SV=1
trembl
ID A0A067KSW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00959 PE=4 SV=1
Gene Ontology
ID GO:0046872
description phd finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37333: 334069-337569 , PASA_asmbl_37335: 338314-341878 , PASA_asmbl_37336: 338961-341851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_380 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
2 Hb_008246_030 0.0847008134 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
3 Hb_017895_020 0.0882118278 - - Vacuolar protein sorting protein, putative [Ricinus communis]
4 Hb_028872_120 0.0882380692 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
5 Hb_003029_130 0.0896293287 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
6 Hb_001178_150 0.0943674505 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
7 Hb_000487_220 0.0953221904 - - eukaryotic translation elongation factor, putative [Ricinus communis]
8 Hb_000120_620 0.0961369469 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
9 Hb_002307_350 0.0978397223 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
10 Hb_002188_090 0.099440292 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
11 Hb_000935_090 0.1011128096 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
12 Hb_003529_130 0.1013916325 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
13 Hb_008725_130 0.102938057 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
14 Hb_002084_040 0.1043762792 - - PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
15 Hb_009620_030 0.10490809 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]
16 Hb_000347_570 0.1062087797 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
17 Hb_003436_050 0.1079412957 - - arf gtpase-activating protein, putative [Ricinus communis]
18 Hb_002301_270 0.1086997915 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
19 Hb_001811_120 0.1093114497 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
20 Hb_000475_020 0.1114364936 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_380 Hb_000363_380 Hb_008246_030 Hb_008246_030 Hb_000363_380--Hb_008246_030 Hb_017895_020 Hb_017895_020 Hb_000363_380--Hb_017895_020 Hb_028872_120 Hb_028872_120 Hb_000363_380--Hb_028872_120 Hb_003029_130 Hb_003029_130 Hb_000363_380--Hb_003029_130 Hb_001178_150 Hb_001178_150 Hb_000363_380--Hb_001178_150 Hb_000487_220 Hb_000487_220 Hb_000363_380--Hb_000487_220 Hb_004920_060 Hb_004920_060 Hb_008246_030--Hb_004920_060 Hb_002612_010 Hb_002612_010 Hb_008246_030--Hb_002612_010 Hb_002301_270 Hb_002301_270 Hb_008246_030--Hb_002301_270 Hb_012404_070 Hb_012404_070 Hb_008246_030--Hb_012404_070 Hb_008246_030--Hb_017895_020 Hb_002675_040 Hb_002675_040 Hb_017895_020--Hb_002675_040 Hb_000329_130 Hb_000329_130 Hb_017895_020--Hb_000329_130 Hb_001900_120 Hb_001900_120 Hb_017895_020--Hb_001900_120 Hb_008725_130 Hb_008725_130 Hb_017895_020--Hb_008725_130 Hb_017895_020--Hb_028872_120 Hb_000914_080 Hb_000914_080 Hb_017895_020--Hb_000914_080 Hb_007943_120 Hb_007943_120 Hb_028872_120--Hb_007943_120 Hb_028872_120--Hb_000329_130 Hb_028872_120--Hb_002301_270 Hb_028872_120--Hb_001178_150 Hb_010315_090 Hb_010315_090 Hb_028872_120--Hb_010315_090 Hb_003029_130--Hb_000487_220 Hb_015099_010 Hb_015099_010 Hb_003029_130--Hb_015099_010 Hb_001473_090 Hb_001473_090 Hb_003029_130--Hb_001473_090 Hb_000935_090 Hb_000935_090 Hb_003029_130--Hb_000935_090 Hb_003029_130--Hb_001178_150 Hb_010925_020 Hb_010925_020 Hb_003029_130--Hb_010925_020 Hb_001178_150--Hb_000935_090 Hb_000347_570 Hb_000347_570 Hb_001178_150--Hb_000347_570 Hb_000796_190 Hb_000796_190 Hb_001178_150--Hb_000796_190 Hb_001178_150--Hb_001473_090 Hb_009151_020 Hb_009151_020 Hb_001178_150--Hb_009151_020 Hb_000120_620 Hb_000120_620 Hb_001178_150--Hb_000120_620 Hb_000475_020 Hb_000475_020 Hb_000487_220--Hb_000475_020 Hb_000504_150 Hb_000504_150 Hb_000487_220--Hb_000504_150 Hb_001811_120 Hb_001811_120 Hb_000487_220--Hb_001811_120 Hb_004970_160 Hb_004970_160 Hb_000487_220--Hb_004970_160 Hb_000209_070 Hb_000209_070 Hb_000487_220--Hb_000209_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.2191 17.6825 12.635 6.34877 24.1071 30.287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.87478 2.56755 4.00571 7.40361 12.2025

CAGE analysis